R package SimRAD: Simulations to predict the number of loci expected in RAD and GBS approaches - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Accéder directement au contenu
Logiciel Année : 2014

R package SimRAD: Simulations to predict the number of loci expected in RAD and GBS approaches

Résumé

This R package provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD aims is to provide an estimation of the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.
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Dates et versions

hal-02793040 , version 1 (05-06-2020)

Identifiants

  • HAL Id : hal-02793040 , version 1
  • PRODINRA : 253282

Citer

Olivier Lepais, Jason T Weir. R package SimRAD: Simulations to predict the number of loci expected in RAD and GBS approaches. 2014. ⟨hal-02793040⟩
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