<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-02816858</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-21T00:32:47+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Carbohydrate-Active Enzymes Database: Principles and Classification of Glycosyltransferases</title>
            <author role="aut">
              <persName>
                <forename type="first">Etienne</forename>
                <surname>Danchin</surname>
              </persName>
              <email type="md5">a96a202cb0bedd55c784d7938f61adf1</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">danchin-etienne-gj</idno>
              <idno type="idhal" notation="numeric">734755</idno>
              <idno type="halauthorid" notation="string">48121-734755</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-4146-5608</idno>
              <idno type="GOOGLE SCHOLAR">https://scholar.google.com/citations?user=NfztKr4AAAAJ&amp;hl=fr&amp;oi=ao</idno>
              <idno type="IDREF">https://www.idref.fr/083014454</idno>
              <affiliation ref="#struct-199349"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Corinne</forename>
                <surname>Rancurel</surname>
              </persName>
              <email type="md5">c66b6e775372a3dad960ada47eac77af</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">corinne-rancurel</idno>
              <idno type="idhal" notation="numeric">1206137</idno>
              <idno type="halauthorid" notation="string">202944-1206137</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-9355-5491</idno>
              <affiliation ref="#struct-199349"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Migration</forename>
                <surname>ProdInra</surname>
              </persName>
              <email type="md5">9e5ed7d56b52b3d4383123b1ffb42236</email>
              <email type="domain">inrae.fr</email>
            </editor>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2020-06-06 14:17:00</date>
              <date type="whenModified">2025-03-21 15:12:21</date>
              <date type="whenReleased">2020-06-06 14:17:00</date>
              <date type="whenProduced">2009</date>
              <fs>
                <f name="inra_publicVise_local" notation="string" n="SC">
                  <string>Scientists</string>
                </f>
              </fs>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="888556">
                <persName>
                  <forename>Migration</forename>
                  <surname>ProdInra</surname>
                </persName>
                <email type="md5">9e5ed7d56b52b3d4383123b1ffb42236</email>
                <email type="domain">inrae.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-02816858</idno>
            <idno type="halUri">https://hal.inrae.fr/hal-02816858</idno>
            <idno type="halBibtex">danchin:hal-02816858</idno>
            <idno type="halRefHtml">&lt;i&gt;Bioinformatics for Glycobiology and Glycomics : An Introduction&lt;/i&gt;, &lt;a target="_blank" href="http://books.google.fr/books?id=wxF7vsDmIT8C&amp;pg=PA91&amp;lpg=PA91&amp;dq=Carbohydrate-Active+Enzymes+Database:+Principles+and+Classification+of+Glycosyltransferases&amp;source=bl&amp;ots=o1vZuTbGL6&amp;sig=nR0oCFUYrE-vTjiTVsdYIMW6AT8&amp;hl=fr&amp;sa=X&amp;ei=TaURVPr-PMXhaqPEgfAO&amp;ved=0CDUQ6AEwAQ#v=onepage&amp;q=Carbohydrate-Active%20Enzymes%20Database%3A%20Principles%20and%20Classification%20of%20Glycosyltransferases&amp;f=false"&gt;John Wiley and Sons&lt;/a&gt;, 2009, 9780470016671. &lt;a target="_blank" href="https://dx.doi.org/10.1002/9780470029619.ch5"&gt;&amp;#x27E8;10.1002/9780470029619.ch5&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Bioinformatics for Glycobiology and Glycomics : An Introduction, John Wiley and Sons, 2009, 9780470016671. &amp;#x27E8;10.1002/9780470029619.ch5&amp;#x27E9;</idno>
            <availability status="restricted"/>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="UNIV-AMU">Aix Marseille Université</idno>
            <idno type="stamp" n="INRA">INRA - Institut national de la recherche agronomique</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="AFMB">Architecture et Fonction des Macromolécules Biologiques</idno>
            <idno type="stamp" n="INRAEPACA">INRAE PACA</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="2">International</note>
            <note type="popular" n="0">No</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Carbohydrate-Active Enzymes Database: Principles and Classification of Glycosyltransferases</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Etienne</forename>
                    <surname>Danchin</surname>
                  </persName>
                  <email type="md5">a96a202cb0bedd55c784d7938f61adf1</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">danchin-etienne-gj</idno>
                  <idno type="idhal" notation="numeric">734755</idno>
                  <idno type="halauthorid" notation="string">48121-734755</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-4146-5608</idno>
                  <idno type="GOOGLE SCHOLAR">https://scholar.google.com/citations?user=NfztKr4AAAAJ&amp;hl=fr&amp;oi=ao</idno>
                  <idno type="IDREF">https://www.idref.fr/083014454</idno>
                  <affiliation ref="#struct-199349"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Corinne</forename>
                    <surname>Rancurel</surname>
                  </persName>
                  <email type="md5">c66b6e775372a3dad960ada47eac77af</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">corinne-rancurel</idno>
                  <idno type="idhal" notation="numeric">1206137</idno>
                  <idno type="halauthorid" notation="string">202944-1206137</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-9355-5491</idno>
                  <affiliation ref="#struct-199349"/>
                </author>
              </analytic>
              <monogr>
                <idno type="isbn">9780470016671</idno>
                <title level="m">Bioinformatics for Glycobiology and Glycomics : An Introduction</title>
                <imprint>
                  <publisher>John Wiley and Sons</publisher>
                  <pubPlace>Chichester (united kingdom)</pubPlace>
                  <date type="datePub">2009</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1002/9780470029619.ch5</idno>
              <idno type="prodinra">269329</idno>
              <ref target="http://books.google.fr/books?id=wxF7vsDmIT8C&amp;pg=PA91&amp;lpg=PA91&amp;dq=Carbohydrate-Active+Enzymes+Database:+Principles+and+Classification+of+Glycosyltransferases&amp;source=bl&amp;ots=o1vZuTbGL6&amp;sig=nR0oCFUYrE-vTjiTVsdYIMW6AT8&amp;hl=fr&amp;sa=X&amp;ei=TaURVPr-PMXhaqPEgfAO&amp;ved=0CDUQ6AEwAQ#v=onepage&amp;q=Carbohydrate-Active%20Enzymes%20Database%3A%20Principles%20and%20Classification%20of%20Glycosyltransferases&amp;f=false" type="seeAlso"/>
              <ref type="publisher">http://books.google.fr/books?id=wxF7vsDmIT8C&amp;pg=PA91&amp;lpg=PA91&amp;dq=Carbohydrate-Active+Enzymes+Database:+Principles+and+Classification+of+Glycosyltransferases&amp;source=bl&amp;ots=o1vZuTbGL6&amp;sig=nR0oCFUYrE-vTjiTVsdYIMW6AT8&amp;hl=fr&amp;sa=X&amp;ei=TaURVPr-PMXhaqPEgfAO&amp;ved=0CDUQ6AEwAQ#v=onepage&amp;q=Carbohydrate-Active%20Enzymes%20Database%3A%20Principles%20and%20Classification%20of%20Glycosyltransferases&amp;f=false</ref>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <classCode scheme="halDomain" n="sdv.mp">Life Sciences [q-bio]/Microbiology and Parasitology</classCode>
              <classCode scheme="halDomain" n="sdv.bv">Life Sciences [q-bio]/Vegetal Biology</classCode>
              <classCode scheme="vocinrae-old" n="Rhodothermus marinus">Rhodothermus marinus</classCode>
              <classCode scheme="vocinrae-old" n="pasteurella multocida">pasteurella multocida</classCode>
              <classCode scheme="vocinrae-old" n="analyse de génome">analyse de génome</classCode>
              <classCode scheme="vocinrae-old" n="bioinformatique">bioinformatique</classCode>
              <classCode scheme="vocinrae-old" n="classification biologique">classification biologique</classCode>
              <classCode scheme="vocinrae-old" n="activité catalytique">activité catalytique</classCode>
              <classCode scheme="vocinrae-old" n="carbohydrate">carbohydrate</classCode>
              <classCode scheme="vocinrae-old" n="glucide">glucide</classCode>
              <classCode scheme="vocinrae-old" n="glycosyltransférase">glycosyltransférase</classCode>
              <classCode scheme="vocinrae-old" n="mécanisme">mécanisme</classCode>
              <classCode scheme="vocinrae-old" n="protéine pliee">protéine pliee</classCode>
              <classCode scheme="vocinrae-old" n="enzyme">enzyme</classCode>
              <classCode scheme="vocinrae-old" n="base de données cazy">base de données cazy</classCode>
              <classCode scheme="halTypology" n="COUV">Book sections</classCode>
              <classCode scheme="halOldTypology" n="COUV">Book sections</classCode>
              <classCode scheme="halTreeTypology" n="COUV">Book sections</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>The classification of carbohydrate-active enzymes, presents a number of challenges to conciliate sequence and genome information with protein structure and reaction mechanisms. The principles of the sequence- and structure-based classification according to CAZy, combining structural and mechanistic information with bioinformatics, are described. In this chapter, we give a particular emphasis to the classification and description of glycosyltransferases relying on phospho-activated sugars. Issued from a limited number of protein folds, the corresponding diverse set of enzyme families was subdivided according to the nature of the phospho-activated sugar (mono- vs. diphospho-activated sugars; axial- vs. equatorial-linked glycosidic moieties; nature of activator) and the type of catalytic mechanism (inverting vs. retaining) to show that these features are usually strictly conserved at family level. Given the practical difficulties to determine glycosyltransferase activity, existing knowledge of the common features found at family level should be used to limit the range of activities to assess experimentally.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-199349" status="OLD">
          <idno type="IdRef">149981651</idno>
          <idno type="RNSR">201220260Z</idno>
          <orgName>Architecture et fonction des macromolécules biologiques</orgName>
          <orgName type="acronym">AFMB</orgName>
          <date type="start">2012-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>Faculté des Sciences de Luminy - ESIL 163 avenue de Luminy CP 925 13288 MARSEILLE CEDEX 09</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.afmb.univ-mrs.fr/</ref>
          </desc>
          <listRelation>
            <relation name="USC1408" active="#struct-92114" type="direct"/>
            <relation name="UMR7257" active="#struct-198056" type="direct"/>
            <relation name="UMR7257" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-92114" status="OLD">
          <idno type="ROR">https://ror.org/01x3gbx83</idno>
          <orgName>Institut National de la Recherche Agronomique</orgName>
          <orgName type="acronym">INRA</orgName>
          <date type="start">1946-05-18</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inra.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-198056" status="VALID">
          <idno type="IdRef">15863621X</idno>
          <idno type="ISNI">0000 0001 2176 4817</idno>
          <idno type="ROR">https://ror.org/035xkbk20</idno>
          <orgName>Aix Marseille Université</orgName>
          <orgName type="acronym">AMU</orgName>
          <date type="start">2012-01-01</date>
          <desc>
            <address>
              <addrLine>Aix-Marseille UniversitéJardins du Pharo58 Boulevard Charles Livon13284 Marseille cedex 7</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.univ-amu.fr/</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>