Sensing and signaling of phosphate starvation: from local to long distance, Plant Cell Physiol, vol.59, issue.9, pp.1714-1736, 2018. ,
Bioavailability of soil inorganic P in the rhizosphere as affected by root-induced chemical changes: a review, Plant Soil, vol.237, issue.2, pp.173-95, 2001. ,
URL : https://hal.archives-ouvertes.fr/hal-02679491
Tackling plant phosphate starvation by the roots, Dev Cell, vol.48, issue.5, pp.599-615, 2019. ,
Identification of primary and secondary metabolites with phosphorus status-dependent abundance in Arabidopsis, and of the transcription factor PHR1 as a major regulator of metabolic changes during phosphorus limitation, Plant Cell Environ, vol.38, issue.1, pp.172-87, 2015. ,
Integration of metabolome and transcriptome analyses highlights soybean roots responding to phosphorus deficiency by modulating phosphorylated metabolite processes, Plant Physiol Biochem, vol.139, pp.697-706, 2019. ,
Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus, Plant Cell Environ, vol.30, issue.1, pp.85-112, 2007. ,
Phosphate starvation and membrane lipid remodeling in seed plants, Prog Lipid Res, vol.52, issue.1, pp.43-50, 2013. ,
Omics' approaches towards understanding plant phosphorus acquisition and use, Phosphorus Metabolism in Plants, vol.48, pp.65-97, 2015. ,
Molecular mechanisms underlying phosphate sensing, signaling, and adaptation in plants, J Integr Plant Biol, vol.56, issue.3, pp.192-220, 2014. ,
Transcriptome responses to phosphate deficiency in Poncirus trifoliata (L.) Raf, Acta Physiol Plant, vol.36, issue.12, pp.3207-3222, 2014. ,
The temporal Transcriptomic response of Pinus massoniana seedlings to phosphorus deficiency, PLoS One, vol.9, issue.8, p.11, 2014. ,
Dissecting nutrient-related co-expression networks in phosphate starved poplars, PLoS One, vol.12, issue.2, p.171958, 2017. ,
Root transcriptomes of two acidic soil adapted Indica rice genotypes suggest diverse and complex mechanism of low phosphorus tolerance, Protoplasma, vol.254, issue.2, pp.725-761, 2017. ,
Integrating QTL mapping and transcriptomics identifies candidate genes underlying QTLs associated with soybean tolerance to lowphosphorus stress, Plant Mol Biol, vol.93, issue.1-2, pp.137-50, 2017. ,
Strand-specific RNA-Seq transcriptome analysis of genotypes with and without low-phosphorus tolerance provides novel insights into phosphorus-use efficiency in maize, BMC Plant Biol, vol.16, p.222, 2016. ,
The influence of phosphorus availability, scion, and rootstock on grapevine shoot growth, leaf area, and petiole phosphorus concentration, Am J Enol Vitic, vol.47, issue.2, pp.217-241, 1996. ,
The influence of phosphorus availability and rootstock on root system characteristics, phosphorus uptake, phosphorus partitioning, and growth efficiency, Am J Enol Vitic, vol.47, issue.4, pp.403-412, 1996. ,
Phosphorus acquisition efficiency and phosphorus remobilization mediate genotypespecific differences in shoot phosphorus content in grapevine, Tree Physiol, vol.38, issue.11, pp.1742-51, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02537894
Nutrient uptake and distribution in a mature 'Pinot Noir' vineyard, HortScience, vol.41, issue.2, pp.336-381, 2013. ,
Long-distance call from phosphate: systemic regulation of phosphate starvation responses, J Exp Bot, vol.65, issue.7, pp.1817-1844, 2013. ,
Regulatory network of microRNA399 and PHO2 by systemic signaling, Plant Physiol, vol.147, issue.2, pp.732-778, 2008. ,
MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis, Plant J, vol.53, issue.5, pp.731-739, 2008. ,
PHO2-dependent degradation of PHO1 modulates phosphate homeostasis in Arabidopsis, Plant Cell, vol.24, issue.5, pp.2168-83, 2012. ,
Identification of downstream components of ubiquitinconjugating enzyme PHOSPHATE2 by quantitative membrane proteomics in Arabidopsis roots, Plant Cell, vol.25, issue.10, pp.4044-60, 2013. ,
Vacuolar Ca2+/H+ transport activity is required for systemic phosphate homeostasis involving shoot-to-root signaling in Arabidopsis, Plant Physiol, vol.156, issue.3, pp.1176-89, 2011. ,
The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus, New Phytol, vol.215, issue.1, pp.323-360, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01608590
Inspection of the grapevine BURP superfamily highlights an expansion of RD22 genes with distinctive expression features in berry development and ABA-mediated stress responses, PLoS One, vol.9, issue.10, p.110372, 2014. ,
Significance of galactinol and raffinose family oligosaccharide synthesis in plants, Front Plant Sci, vol.6, p.656, 2015. ,
Cysteine-rich peptides (CRPs) mediate diverse aspects of cell-cell communication in plant reproduction and development, J Exp Bot, vol.62, issue.5, pp.1677-86, 2011. ,
Growth-regulating factors (GRFs): a Small transcription factor family with important functions in plant biology, Mol Plant, vol.8, issue.7, pp.998-1010, 2015. ,
The genomic diversification of grapevine clones, BMC Genomics, vol.20, issue.1, p.972, 2019. ,
Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus, Nature Plants, vol.6, issue.1, pp.34-45, 2020. ,
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor, Nat Genet, vol.51, issue.6, pp.1044-51, 2019. ,
Coexpressionbased clustering of Arabidopsis root genes predicts functional modules in early phosphate deficiency signaling, Plant Physiol, vol.155, issue.3, pp.1383-402, 2011. ,
WRKY75 Transcription Factor Is a Modulator of Phosphate Acquisition and Root Development in Arabidopsis, Plant Physiol, vol.143, issue.4, pp.1789-801, 2007. ,
The WRKY6 Transcription Factor Modulates PHOSPHATE1 Expression in Response to Low Pi Stress in Arabidopsis, Plant Cell, vol.21, issue.11, pp.3554-66, 2009. ,
Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch-and specific clock-controlled genes, Proc Natl Acad Sci, vol.99, issue.17, pp.11513-11521, 2002. ,
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana, Plant Cell, vol.19, issue.11, pp.3418-3454, 2007. ,
Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings, Plant Cell Environ, vol.39, issue.4, pp.768-86, 2016. ,
Biological function of changes in RNA metabolism in plant adaptation to abiotic stress, Plant Cell Physiol, vol.60, issue.9, pp.1897-905, 2019. ,
Mineral nutrition of higher plants, 1995. ,
Metabolism and roles of stilbenes in plants, Plant Sci, vol.177, issue.3, pp.143-55, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02669226
Combinatorial regulation of Stilbene synthase genes by WRKY and MYB transcription factors in grapevine (Vitis vinifera L.), Plant Cell Physiol, vol.59, issue.5, pp.1043-59, 2018. ,
The R2R3-MYB Transcription Factors MYB14 and MYB15 Regulate Stilbene Biosynthesis in Vitis vinifera, Plant Cell, vol.25, issue.10, pp.4135-4184, 2013. ,
Transcriptional Characterization of a Widely-Used Grapevine Rootstock Genotype under Different Iron-Limited Conditions, Front Plant Sci, vol.7, 1994. ,
URL : https://hal.archives-ouvertes.fr/hal-02861101
Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1, Plant Cell, vol.29, issue.9, pp.2269-84, 2017. ,
Post-translational regulation of the dicing activities of Arabidopsis DICER-LIKE 3 and 4 by inorganic phosphate and the redox state, Plant Cell Physiol, vol.58, issue.3, pp.485-95, 2017. ,
Methylome analysis reveals an important role for epigenetic changes in the regulation of the Arabidopsis response to phosphate starvation, Proc Natl Acad Sci, vol.112, issue.52, pp.7293-302, 2015. ,
Site-dependent differences in DNA methylation and their impact on plant establishment and phosphorus nutrition in Populus trichocarpa, PLoS One, vol.11, issue.12, p.168623, 2016. ,
Nutrient stress-induced chromatin changes in plants, Curr Opin Plant Biol, vol.39, pp.1-7, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01594549
Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype, J Exp Bot, vol.68, issue.15, pp.4339-55, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01608893
The different tolerance to magnesium deficiency of two grapevine rootstocks relies on the ability to cope with oxidative stress, BMC Plant Biol, vol.19, p.17, 2019. ,
Grapevine grafting: Scion transcript profiling and defense-related metabolites induced by rootstocks, Front Plant Sci, vol.8, p.654, 2017. ,
Grafting with rootstocks induces extensive transcriptional re-programming in the shoot apical meristem of grapevine, BMC Plant Biol, vol.13, p.147, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02647594
Rootstock-regulated gene expression patterns associated with fire blight resistance in apple, BMC Genomics, vol.13, p.9, 2012. ,
Rootstock-induced dwarfing in cherries is caused by differential cessation of terminal meristem growth and is triggered by rootstock-specific gene regulation, Tree Physiol, vol.29, issue.7, pp.927-963, 2009. ,
Transcriptome profiling to understand the effect of Citrus rootstocks on the growth of 'Shatangju' mandarin, PLoS One, vol.12, issue.1, p.22, 2017. ,
Genome-wide identification and comparative analysis of grafting-responsive mRNA in watermelon grafted onto bottle gourd and squash rootstocks by high-throughput sequencing, Mol Gen Genomics, vol.291, issue.2, pp.621-654, 2016. ,
Water limitation and rootstock genotype interact to alter grape berry metabolism through transcriptome reprogramming, Hortic Res-England, vol.2, p.13, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02514415
Responses of grapevine rootstocks to drought through altered root system architecture and root transcriptomic regulations, Plant Physiol Biochem, vol.127, pp.256-68, 2018. ,
Elucidation of the mechanisms of long-distance mRNA movement in a Nicotiana benthamiana/tomato heterograft system, Plant Physiol, vol.177, issue.2, pp.745-58, 2018. ,
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla, Nature, vol.449, issue.7161, pp.463-470, 2007. ,
URL : https://hal.archives-ouvertes.fr/inria-00180136
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data, Genome Biol, vol.8, issue.2, p.19, 2007. ,
, R: A language and environment for statistical computing, 2018.
ArrayExpress update -from bulk to single-cell expression data, Nucleic Acids Res, vol.47, issue.D1, pp.711-716, 2019. ,
FastQC: a quality control tool for high throughput sequence data ,
Salmon provides fast and bias-aware quantification of transcript expression, Nat Methods, vol.14, issue.4, pp.417-426, 2017. ,
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences, vol.4, p.1521, 2015. ,
A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3), Genomics Data, vol.14, pp.56-62, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01619926
Fast and sensitive protein alignment using DIAMOND, Nat Methods, vol.12, issue.1, pp.59-60, 2015. ,
WGCNA: an R package for weighted correlation network analysis, BMC Bioinformatics, vol.9, p.559, 2008. ,
Fast R functions for robust correlations and hierarchical clustering, J Stat Softw, vol.46, issue.11, pp.1-17, 2012. ,
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol, vol.15, issue.12, p.550, 2014. ,
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes, Plant J, vol.37, issue.6, pp.914-953, 2004. ,
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