Current impact and future directions of high throughput sequencing in plant virus diagnostics, vol.188, pp.90-96, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02635445
A Framework for the Evaluation of Biosecurity, Commercial, Regulatory and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies, Front Microbiol, vol.8, p.45, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01606670
Plant virus metagenomics: advances in virus discovery, Phytopathology, vol.105, pp.716-727, 2015. ,
Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology, Mol Plant Pathol, vol.10, p.19523106, 2009. ,
Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms, Annu Rev Phytopathol, vol.53, pp.425-444, 2015. ,
Application of HTS for Routine Plant Virus Diagnostics: State of the Art and Challenges, Front. Plant Science, vol.9, pp.1-4, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02625816
Peach RNA viromes in six different peach cultivars, Sci Rep, vol.8, issue.1, p.29382911, 2018. ,
Deep sequencing analysis of viruses infecting grapevines: virome of a vineyard, Virology, vol.400, pp.157-163, 2010. ,
High-Throughput Sequencing and the Viromic Study of Grapevine Leaves: From the Detection of Grapevine-Infecting Viruses to the Description of a, New Environmental Tymovirales Member. Front. Microbiol, vol.9, p.1782, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02626175
A complex virome unveiled by deep sequencing analysis of RNAs from a French Pinot Noir grapevine exhibiting strong leafroll symptoms, Arch. Virol, vol.163, issue.11, p.30033497, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02628897
A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease, PLoS ONE, vol.13, issue.3, p.193888, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02624650
Cherry leaf roll virus abundant on Betula pubescens in Finland, Silva Fennica, vol.41, pp.755-762, 2007. ,
High genetic diversity at the inter-/intra-host level of Cherry leaf roll virus population associated with the birch leaf-roll disease in Fennoscandia, Scand J For Res, vol.31, issue.6, pp.546-560, 2016. ,
High genetic variation in a small population of Cherry leaf roll virus in Betula sp., of montane origin in Corsica, For Pathol, vol.46, issue.6, pp.595-599, 2016. ,
Cherry leaf roll virus-an emerging virus in Finland?, Silva Fennica, vol.43, pp.727-738, 2009. ,
Mü hlbach HP. Forests diseases caused by viruses, Infectious forest diseases, pp.97-110, 2013. ,
Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data, PLoS Comput Biol, vol.12, issue.6, p.1004957, 2016. ,
OligoCalc: an online oligonucleotide properties calculator', Nucleic Acids Res, vol.35, 2007. ,
Strategies to facilitate the development of uncloned or cloned infectious full-length viral cDNAs: Apple chlorotic leaf spot virus as a case study, Virol J, vol.8, p.488, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02644133
AliView: a fast and lightweight alignment viewer and editor for large datasets, Bioinformatics, vol.30, issue.22, pp.3276-3278, 2014. ,
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0, Molecular Biology and Evolution, vol.30, pp.2725-2729, 2013. ,
Complete genome sequence and analysis of blackcurrant leaf chlorosis associated virus, a new member of the genus Idaeovirus, Arch Virol, vol.162, p.28190194, 2017. ,
Characterization and detection of a novel idaeovirus infecting blackcurrant, Eur J Plant Pathol, vol.149, pp.751-757, 2017. ,
Emerging viruses in urban green-detection of the virome in birch (Betula sp, J Horticulture, Biological Sciences, vol.5, issue.2, 2018. ,
, Virus Taxonomy, Committee on Taxonomy of Viruses (ICTV), 2016.
Absterbende Birken im urbanen Grün Berlins-eine Studie zur Virusinfektion, Jahrbuch der Baumpflege 2016, pp.276-283 ,
Shifting the paradigm from pathogens to pathobiome: new concepts in the light of metaomics, Front. Cell. Infect.Microbiol, vol.4, p.29, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01153583
The hologenome concept: Human, animal and plant microbiota, 2013. ,
The importance of the microbiome of the plant holobiont, New Phytol, vol.206, pp.1196-1206, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01115639
Disentangling the factors shaping microbiota composition across the plant holobiont, New Phytol, vol.209, pp.454-457, 2016. ,
Multi-Approach Analysis for the Identification of Proteases within Birch Pollen, vol.18, p.1433, 2017. ,
Viruserkrankungen im urbanen Grün-eine Studie an Birken im Berliner Bezirk Steglitz-Zehlendorf Viral diseases in urban areas-a study on birch in Berlin Steglitz-Zehlendorf Jahrbuch der Baumpflege, 21, pp.327-332, 2017. ,