H. Akaike, Information theory and an extension of the maximum likelihood principle, Proc. 2nd Int. Symp. Inf. Theory, pp.267-281, 1973.

S. F. Altschup, W. Gish, T. Pennsylvania, and U. Park, Basic Local Alignment Search Tool 2. 215. Department of Computer Science, pp.403-410, 1990.

M. L. Baer, J. Ravel, J. Chun, R. T. Hill, and H. N. Williams, A proposal for the reclassification of Bdellovibrio stolpii and Bdellovibrio starrii into a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively, Int. J. Syst. Evol. Microbiol, vol.50, pp.219-224, 2000.

M. L. Baer, J. Ravel, S. A. Piñeiro, D. Guether-borg, and H. N. Williams, Reclassification of salt-water Bdellovibrio sp. as Bacteriovorax marinus sp. nov. and Bacteriovorax litoralis sp. nov, Int. J. Syst. Evol. Microbiol, vol.54, pp.1011-1016, 2004.

G. C. Baker, J. J. Smith, and D. A. Cowan, Review and re-analysis of domain-specific 16S primers, J. Microbiol. Methods, vol.55, pp.541-555, 2003.

E. Ben-dov, O. H. Shapiro, N. Siboni, and A. Kushmaro, Advantage of using inosine at the 3? termini of 16S rRNA gene universal primers for the study of microbial diversity, Appl. Environ. Microbiol, vol.72, pp.6902-6906, 2006.

D. A. Benson, M. Cavanaugh, K. Clark, I. Karsch-mizrachi, D. J. Lipman et al., GenBank. Nucleic Acids Res, vol.41, pp.36-42, 2013.

C. Bleidorn, Phylo-genomics: An Introduction, 2017.

J. Castresana, Selection of Conserved Blocks From Multiple Alignments for Their Use in Phylogenetic Analysis, vol.17, pp.540-552, 2000.

S. Chakravorty, D. Helb, M. Burday, N. Connell, and D. Alland, A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria, J. Microbiol. Methods, vol.69, pp.330-339, 2007.

Y. Davidov and E. Jurkevitch, Diversity and evolution of Bdellovibrio-and-like organisms (BALOs), reclassification of Bacteriovorax starrii as Peredibacter starrii gen. nov., comb. nov., and description of the Bacteriovorax-Peredibacter clade as Bacteriovoracaceae fam. nov, Int. J. Syst. Evol. Microbiol, vol.54, pp.1439-1452, 2004.

Y. Davidov, A. Friedjung, and E. Jurkevitch, Structure analysis of a soil community of predatory bacteria using culture-dependent and culture-independent methods reveals a hitherto undetected diversity of Bdellovibrio-and-like organisms, Environ. Microbiol, vol.8, pp.1667-1673, 2006.

T. Z. Desantis, P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie et al., Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB, Appl. Environ. Microbiol, vol.72, pp.5069-5072, 2006.

V. Elbrecht and F. Leese, PrimerMiner: an r package for development and in silico validation of DNA metabarcoding primers, Methods Ecol. Evol, vol.8, pp.622-626, 2017.

V. Elbrecht, T. W. Braukmann, N. V. Ivanova, S. W. Prosser, M. Hajibabaei et al., Validation of COI metabarcoding primers for terrestrial arthropods, PeerJ, vol.2019, pp.1-23, 2019.

J. Ezzedine, G. Pavard, M. Gardillon, and S. Jacquet, Bdellovibrio sp : An Important Bacterial Predator in Lake Geneva ?, 2020.

J. A. Ezzedine, L. Jacas, Y. Desdevises, and S. Jacquet, Bdellovibrio and like organisms in Lake Geneva: an unseen elephant in the room?, Front. Microbiol, vol.11, 2020.
URL : https://hal.archives-ouvertes.fr/hal-02518788

S. Guindon, J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk et al., New Algorithms and Methods to Estimate Maximum-likelihood Phylogenies : Assessing the Performance of PhyML 3.0. 59, pp.307-321, 2010.
URL : https://hal.archives-ouvertes.fr/lirmm-00511784

M. W. Hahn, J. Schmidt, U. Koll, M. Rohde, S. Verbarg et al., Silvanigrella aquatica gen. nov., sp. nov., isolated from a freshwater lake, description of silvanigrellaceae fam. nov. and silvanigrellales ord. nov., reclassification of the order bdellovibrionales in the class oligoflexia, reclassification of the famil, Int. J. Syst. Evol. Microbiol, vol.67, pp.2555-2568, 2017.

V. Iebba, F. Santangelo, V. Totino, M. Nicoletti, A. Gagliardi et al., Higher prevalence and abundance of Bdellovibrio bacteriovorus in the human gut of healthy subjects, PLoS One, vol.8, pp.1-9, 2013.

E. Jurkevitch, M. Dworkin, S. Falkow, E. Rosenberg, and K. H. Schleifer, The genus Bdellovibrio, The Prokaryotes : A Handbook on the Biology of Bacteria, vol.7, pp.12-30, 2006.

E. Jurkevitch, Isolation and classification of Bdellovibrio and like organisms, Curr. Protoc. Microbiol, 2012.

E. Jurkevitch and Y. Davidov, Phylogenetic diversity and evolution of predatory prokaryotes, Microbiol. Monogr, pp.12-56, 2006.

E. Jurkevitch and B. Ramati, Design and uses of Bdellovibrio 16S rRNA-targeted oligonucleotides, FEMS Microbiol. Lett, vol.184, issue.00, pp.51-54, 2000.

P. P. Kandel, Z. Pasternak, J. Van-rijn, O. Nahum, and E. Jurkevitch, Abundance, diversity and seasonal dynamics of predatory bacteria in aquaculture zero discharge systems, FEMS Microbiol. Ecol, vol.89, pp.149-161, 2014.

T. M. Keane, C. J. Creevey, M. M. Pentony, T. J. Naughton, and J. O. Mcinerney, Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified, BMC Evol. Biol, vol.6, pp.1-17, 2006.

A. Klindworth, E. Pruesse, T. Schweer, J. Peplies, C. Quast et al., Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies, Nucleic Acids Res, vol.41, pp.1-11, 2013.

S. F. Koval, H. N. Williams, C. Stine, and O. , Reclassification of bacteriovorax marinus as Halobacteriovorax marinus gen. Nov., comb. nov. and bacteriovorax litoralis as halobacteriovorax litoralis comb. nov.; description of halobacteriovoraceae fam. nov. in the class Deltaproteobacteria, Int. J. Syst. Evol. Microbiol, vol.65, pp.593-597, 2015.

S. Kumar, G. Stecher, and K. Tamura, MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets, Mol. Biol. Evol, vol.33, pp.1870-1874, 2016.

K. A. Lydon and E. K. Lipp, Taxonomic annotation errors incorrectly assign the family Pseudoalteromonadaceae to the order Vibrionales in Greengenes: implications for microbial community assessments, PeerJ, vol.6, 2018.

E. P. Mccauley, B. Haltli, and G. K. Russel, Description of Pseudobacteriovorax antillogorgiicola gen. nov., sp. no., a bacterium isolated from the gorgonin octocoral Antillogorgia elisabethae, belonging to the family Pseudobacteriovoracaceae fam. nov., within the order Bdellovibrionales, Int. J. Syst. Evol. Microbiol, vol.65, pp.522-530, 2015.

B. Paix, J. A. Ezzedine, and S. Jacquet, Diversity, dynamics and distribution of Bdellovibrio and like organisms in peri-alpine lakes, Appl. Environ. Microbiol, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02627549

S. A. Piñeiro, H. N. Williams, and O. C. Stine, Phylogenetic relationships amongst the saltwater members of the genus Bacteriovorax using rpoB sequences and reclassification of Bacteriovorax stolpii as Bacteriolyticum stolpii gen. nov., comb. nov, Int. J. Syst. Evol. Microbiol, vol.58, pp.1203-1209, 2008.

C. Quast, E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer et al., The SILVA Ribosomal RNA Gene Database Project: Improved Data Processing and Webbased Tools. 41, pp.590-596, 2013.

. R-core-team, R: A Language and Environment for Statistical Computing, 2018.

T. Rognes, T. Flouri, B. Nichols, C. Quince, and F. Mahé, VSEARCH: a versatile open source tool for metagenomics, PeerJ, vol.4, pp.1-22, 2016.

F. Ronquist, M. Teslenko, P. V. Mark, D. L. Ayres, A. Darling et al., MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. 61, pp.539-542, 2012.

P. D. Schloss, S. L. Westcott, T. Ryabin, J. R. Hall, M. Hartmann et al., Introducing mothur: opensource, platform-independent, community-supported software for describing and comparing microbial communities, Appl. Environ. Microbiol, vol.75, pp.7537-7541, 2009.

M. ?pibida, B. Krawczyk, M. Olszewski, and J. Kur, Modified DNA polymerases for PCR troubleshooting, J. Appl. Genet, vol.58, pp.133-142, 2017.

B. Thornton and C. Basu, Real-time PCR (qPCR) primer design using free online software, Biochem. Mol. Biol. Educ, vol.39, pp.145-154, 2011.

A. Untergasser, I. Cutcutache, T. Koressaar, J. Ye, B. C. Faircloth et al., Primer3-new capabilities and interfaces, Nucleic Acids Res, vol.40, pp.1-12, 2012.

M. Van-essche, I. Sliepen, G. Loozen, J. Van-eldere, M. Quirynen et al., Development and performance of a quantitative PCR for the enumeration of Bdellovibrionaceae, Environ. Microbiol. Rep, vol.1, pp.228-233, 2009.

H. Wickham, W. Chang, L. Henry, T. L. Pedersen, K. Takahashi et al., Create Elegant Data Visualisations Using the Grammar of Graphics, vol.2, 2018.

H. N. Williams and S. Piñeiro, Ecology of the predatory Bdellovibrio and like organisms, Microbiol. Monogr, 2006.

H. N. Williams, D. S. Lymperopoulou, R. Athar, A. Chauhan, T. L. Dickerson et al., Halobacteriovorax, an underestimated predator on bacteria: potential impact relative to viruses on bacterial mortality, ISME J, vol.10, pp.491-499, 2016.

J. Ye, G. Coulouris, I. Zaretskaya, I. Cutcutache, S. Rozen et al., Primer-BLAST: A Tool to Design Target-specific Primers for Polymerase Chain Reaction, vol.13, pp.134-145, 2012.

G. Zheng, C. Wang, H. N. Williams, and S. A. Pineiro, Development and evaluation of a quantitative real-time PCR assay for the detection of saltwater Bacteriovorax, Environ. Microbiol, vol.10, pp.2515-2526, 2008.