Taxonomy-free molecular diatom index for high-throughput EDNA biomonitoring, Mol Ecol Resour, vol.17, issue.6, pp.1231-1242, 2017. ,
Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing, Mol Ecol, vol.21, pp.2039-2044, 2012. ,
State of the world's freshwater ecosystems: physical, chemical, and biological changes, Annu Rev Environ Resour, vol.36, pp.75-99, 2011. ,
Predicting the ecological quality status of marine environments from EDNA metabarcoding data using supervised machine learning, Environ Sci Technol, vol.51, issue.16, pp.9118-9126, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01577896
Improvements of the Biological Diatom Index (BDI): description and efficiency of the new version (BDI-2006), Ecol Indic, vol.9, pp.621-650, 2009. ,
Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists, Mol Ecol, vol.19, pp.2829-2831, 2010. ,
, Directive 2000/60/EC of the European Parliament and of the council of 23rd October 2000 establishing a framework for community action in the field of water policy, Off J Eur Communities, vol.327, pp.1-72, 2000.
Bioindicators: using organisms to measure environmental impacts, Nat Educ Knowl, vol.3, issue.10, p.8, 2011. ,
Méthodes d'Analyse et d'Appreçiation Des Cours d'Eau, Diatoméés Niveau R, 2007. ,
, Etat de l'environnement N°0740. Office Fédéral de l'Environnement, p.132
Freshwater biomonitoring in the information age, Front Ecol Environ, vol.15, issue.5, pp.266-274, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01604509
A next-generation sequencing approach to river biomonitoring using benthic diatoms, Freshw Sci, vol.33, pp.349-363, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02632667
First evidence of the existence of semi-cryptic species and of a phylogeographic structure in the Gomphonema parvulum (Kützing) Kützing complex (Bacillariophyta), Protist, vol.164, pp.686-705, 2012. ,
Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms, Mol Ecol Resour, vol.13, issue.4, pp.607-619, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02644189
Okologie Der Pflanzliche Saprobien, Berichte Der Deutsche Botanische Gesellschaften, vol.26, pp.505-519, 1908. ,
Contribution à La Gestion Des Eaux Continentales: Utilisation Des Oligochètes Comme Descripteurs de l'état Biologique et Du Degré de Pollution Des Eaux et Des Sédiments, 1989. ,
Oligochaete assemblages in the hyporheic zone and coarse surface sediments: their importance for understanding of ecological functioning of watercourses, Hydrobiologia, vol.564, pp.171-181, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00452234
Refinement of biomonitoring of urban watercourses by combining descriptive and ecohydrological approaches, Ecohydrol Hydrobiol, vol.10, pp.3-11, 2010. ,
From research to operational biomonitoring of freshwaters: a suggested conceptual framework and practical solutions, Ecohydrol Hydrobiol, vol.12, pp.9-20, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02597285
Oligochaetes, organic sedimentation, and trophic state: how to assess the biological recovery of sediments in lakes, Aquat Sci, vol.59, pp.26-33, 1997. ,
Indices Basé Sur Les Oligochètes et Les Chironomes Indiquant La Restauration Écologique Des Sédiments Du Léman, Bulletin de La Société Vaudoise Des Sciences Naturelles, vol.91, pp.283-300, 2009. ,
, DNAqua-Net: developing new genetic tools for bioassessment and monitoring of aquatic ecosystems, 2016.
Méthodes d'analyse et d'appréciation des cours d'eau. Système Modulaire Gradué. Informations concernant la protection des eaux n°26, vol.II, p.43, 1996. ,
Use of oligochaete communities for assessment of ecotoxicological risk in fine sediment of rivers and canals of the Artois-Picardie Water Basin (France), Hydrobiologia, vol.410, pp.25-37, 2000. ,
URL : https://hal.archives-ouvertes.fr/hal-02579025
Recent views on river pollution and diatoms, Hydrobiologia, vol.683, pp.1-24, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02651508
R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring, Database, vol.2016, p.16, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01426772
Do We Similarly Assess Diversity with Microscopy and High-Throughput Sequencing? Case of Microalgae in Lakes, Org Divers Evol, vol.18, p.51, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02625205
Metabarcoding of Lake Benthic diatoms: from structure assemblages to ecological assessment, Hydrobiologia, vol.807, issue.1, pp.37-51, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02621047
The Pollution Biology of Aquatic Oligochaetes, 2011. ,
Towards next-generation biodiversity assessment using DNA metabarcoding, Mol Ecol, vol.21, issue.8, pp.2045-2050, 2012. ,
Assessing ecological status with diatoms DNA metabarcoding: scaling-up on a WFD monitoring network, Ecol Indic, vol.82, pp.1-12, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02622658
, Environ Sci Pollut Res
Avoiding quantification bias in metabarcoding: application of a cell biovolume correction factor in diatom molecular biomonitoring, Methods Ecol Evol, vol.00, pp.1-10, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02623786
Environmental monitoring: inferring the diatom index from next-generation sequencing data, Environ Sci Technol, vol.49, issue.13, pp.7597-7605, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01245156
Use of oligochaete communities for assessing the quality of sediments in watercourses of the Geneva area (Switzerland) and Artois-Picardie Basin (France): proposition of heavy metal toxicity thresholds, Ecohydrology & Hydrobiology, vol.14, pp.142-151, 2014. ,
Utilisation Des Communautés d'oligochètes Pour l'évaluation de La Qualité Biologique et Du Fonctionnement Des Cours d'eau : Un Bilan à Partir de Données Genevoises (Suisse), Arch Des Sci, vol.68, pp.105-116, 2015. ,
Molecular Barcoding of Aquatic Oligochaetes: Implications for Biomonitoring, PLoS ONE, vol.10, issue.4, p.125485, 2015. ,
Cytochrome c oxidase barcodes for aquatic oligochaete identification: development of a Swiss reference database, PeerJ, vol.5, p.4122, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01703139
Global threats to human water security and river biodiversity, Nature, vol.467, pp.555-561, 2010. ,
Approche Regionale de Typologie Des Eaux Courantes et Éléments Pour La Définition Des Peuplements de Référence d'invertébrés. Lyon BEA/LH: Cemagref WPO (1998) Water Protection Ordinance of, 1998. ,
Zur Prazisierung Der Biologischen Klassifikation Des Reinheit Fliessender Gewasser, Arch Hydrobiol, vol.57, pp.389-407, 1961. ,