Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes, Appl Environ Microbiol, vol.77, 1937. ,
Vertical segregation and phylogenetic characterization of ammonia-oxidizing archaea in a deep oligotrophic lake, ISME J, vol.6, pp.1786-1797, 2012. ,
Some mixotrophic flagellate species selectively graze on archaea, Appl Environ Microbiol, vol.83, pp.2317-2333, 2017. ,
Bottom-up versus top-down control of hypo-and epilimnion free-living bacterial community structures in two neighboring freshwater lakes, Appl Environ Microbiol, vol.77, pp.3591-3599, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02652016
A 2-year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France), Microb Ecol, vol.61, pp.941-954, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02651736
Spatiotemporal changes in the structure of archaeal communities in two deep freshwater lakes, FEMS Microbiol Ecol, vol.86, pp.215-230, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02646468
Accelerated dissolution of diatom silica by marine bacterial assemblages, Nature, vol.397, pp.508-512, 1999. ,
Bacterial control of silicon regeneration from diatom detritus: significance of bacterial ectohydrolases and species identity, Limnol Oceanogr, vol.46, pp.1606-1623, 2001. ,
Abundance and diversity of ammonia-oxidizing archaea and bacteria in sediments of trophic end members of the Laurentian Great Lakes, Erie and Superior, PLOS ONE, vol.9, p.97068, 2014. ,
Viral and flagellate control of prokaryotic production and community structure in offshore Mediterranean water, Appl Environ Microbiol, vol.75, pp.4801-4812, 2009. ,
Environmental factors determining ammoniaoxidizing organism distribution and diversity in marine environments, Environ Microbiol, vol.14, pp.714-729, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00661746
Bacteria, Archaea and Crenarchaeota in the epilimnion and hypolimnion of a deep holo-oligomictic lake, Appl Environ Microbiol, vol.75, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00529614
Diversity and abundance of ammonia-oxidizing Archaea and Bacteria in tropical and cold water coral reef sponges, Aquat Microb Ecol, vol.68, pp.215-230, 2013. ,
Technique for enumeration of heterotrophic and phototrophic nanoplankton, using epifluorescence microscopy, and comparison with other procedures, Appl Environ Microbiol, vol.46, pp.491-498, 1983. ,
Nonpoint pollution of surface waters with phosphorus and nitrogen, Ecol Appl, vol.8, pp.559-568, 1998. ,
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight, ISME J, vol.7, pp.2259-2273, 2013. ,
Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean, Environ Microbiol, vol.12, pp.679-688, 2010. ,
Ecology and distribution of Thaumarchaea in the deep hypolimnion of Lake Maggiore, Archaea, vol.2015, p.590434, 2015. ,
Microbial community structure and dynamics in the largest natural French lake (Lake Bourget), Microb Ecol, vol.52, pp.72-89, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02665986
Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids, Environ Microbiol, vol.9, pp.1001-1016, 2007. ,
Taxon-specific and seasonal variations in flagellates grazing on heterotrophic bacteria in the oligotrophic Lake Annecy -importance of mixotrophy, FEMS Microbiol Ecol, vol.46, pp.317-329, 2003. ,
Spatial variability in the abundance and composition of the free-living bacterioplankton community in the pelagic zone of Lake Bourget (France), FEMS Microbiol Ecol, vol.58, pp.109-119, 2006. ,
Exchange of trace gases between terrestrial ecosystems and the atmosphere, pp.7-21, 1989. ,
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean, Proc Natl Acad Sci, vol.102, pp.14683-14688, 2005. ,
Marine microbial dynamics and their ecological interpretation, Nat Rev Microbiol, vol.13, pp.133-146, 2015. ,
Inter-annual recurrence of archaeal assemblages in the coastal NW Mediterranean Sea (Blanes Bay Microbial Observatory), Limnol Oceanogr, vol.55, pp.2117-2125, 2010. ,
Reactive nitrogen and the world: 200 years of change, Ambio, vol.3, pp.64-71, 2002. ,
Ecological coherence of diversity patterns derived from classical fingerprinting and next generation sequencing techniques, Environ Microbiol, vol.16, pp.2672-2681, 2014. ,
High abundances of potentially active ammonia-oxidizing bacteria and archaea in oligotrophic, high-altitude lakes of the Sierra Nevada, PLOS ONE, vol.9, p.111560, 2014. ,
Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices, Environ Microbiol, vol.9, pp.2364-2374, 2007. ,
Enzymology of the oxidation of ammonia to nitrite by bacteria, Antonie van Leeuwenhoek, vol.71, pp.59-67, 1997. ,
Primers containing universal bases reduce multiple amoA gene specific DGGE band patterns when analysing the diversity of beta-ammonia oxidizers in the environment, J Microbiol Methods, vol.66, pp.147-155, 2006. ,
Nutrient pollution of coastal rivers, bays, and sea, Issues Ecol, vol.7, pp.1-15, 2000. ,
Suivi environnemental des eaux du lac du Bourget pour l'année 2014. Rapport INRA-CISALB-CALB, www6, 2014. ,
Microbial communities in iron-silica-rich microbial mats at deep sea hydrothermal fields of the Southern Mariana Trough, Environ Microbiol, vol.11, pp.2094-2111, 2009. ,
Isolation of an autotrophic ammonia-oxidizing marine archaeon, Nature, vol.437, pp.543-546, 2005. ,
Archaea predominate among ammonia-oxidizing prokaryotes in soils, Nature, vol.442, pp.806-809, 2006. ,
Vertical distribution of ammonia-oxidizing Crenarchaeota and methanogens in the epipelagic waters of Lake, 2010. ,
, Appl Environ Microbiol, vol.76, pp.6853-6863
Single cell genomics shedding light on marine Thaumarchaeaota diversification, ISME J, vol.8, pp.732-736, 2014. ,
Identification, enumeration, and diversity of ammonia-oxidizing archaea in the Laurentian Great Lakes, FEMS Microbiol Lett, vol.327, pp.41-46, 2012. ,
Archaeal amoA and ureC genes and their transcriptional activity in the, Arctic Ocean. Sci Rep, vol.4, p.4661, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01358986
Effect of temperature and disinfection strategies on ammonia-oxidizing bacteria in a bench-scale drinking water distribution system, Water Res, vol.37, pp.1805-1817, 2003. ,
Spatiotemporal changes in the structure and composition of a lessabundant bacterial phylum (Planctomycetes) in two perialpine lakes, Appl Environ Microbiol, vol.77, pp.4811-4821, 2011. ,
URL : https://hal.archives-ouvertes.fr/bioemco-00608212
Vertical structure of archaeal communities and the distribution of ammonia monooxygenases A gene variants in two meromictic high arctic lakes, Environ Microbiol, vol.11, pp.687-699, 2009. ,
Targeting spatiotemporal dynamics of planktonic SAG-MGC-1 and segregation of ammonia-oxidizing thaumarchaeota ecotypes by newly designed primers and quantitative polymerase chain reaction, Environ Microbiol, vol.16, pp.689-700, 2014. ,
The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics, Environ Microbiol, vol.10, pp.1057-1067, 2008. ,
Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution, Nature, vol.359, pp.139-142, 1992. ,
Dynamics of ammonia-oxidizing archaea and bacteria populations and contribution to soil nitrification potentials, ISME J, vol.6, 2012. ,
Bacterial community shift is induce by dynamic environmental parameters in a changing coastal ecosystem (northern Adriatic, northeastern Mediterranean Sea) -a 2-year time-series study, Environ Microbiol, vol.17, pp.3581-3596, 2015. ,
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling, Environ Microbiol, vol.7, 1985. ,
Community fingerprinting in a sequencing world, FEMS Microbiol Ecol, vol.89, pp.316-330, 2014. ,
Environmental genome shotgun sequencing of the Sargasso Sea, Science, vol.304, pp.66-74, 2004. ,
Temporal and spatial coexistence of archaeal and bacterial amoA genes and gene transcripts in Lake Lucerne, Archaea, vol.2013, p.289478, 2013. ,
Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake, FEMS Microbiol Ecol, vol.83, pp.515-526, 2013. ,
Likens GE and others (1997) Human alteration of the global nitrogen cycle: sources and consequences, Ecol Appl, vol.7, pp.737-750 ,
Archaeal nitrification in the ocean, Proc Natl Acad Sci, vol.103, pp.12317-12322, 2006. ,
Temporal and spatial dynamics of archaeal communities in two freshwater lakes at different trophic status, Front Microbiol, vol.7, p.451, 2016. ,
Temperature responses of ammonia-oxidizing prokaryotes in freshwater sediment microcosms, PLOS ONE, vol.9, p.100653, 2014. ,
Diversity and distribution of amoA-type nitrifying and nirS-type denitrifying microbial communities in the Yangtse River estuary, Biogeosciences, vol.11, pp.2131-2145, 2014. ,
Shifts in the pelagic ammonia-oxidizing microbial communities along the eutrophic estuary of Yong River in Ningbo city, China. Front Microbiol, vol.6, p.1180, 2015. ,