D. Aiello, K. Patel, and E. Lasagna, The myostatin gene: an overview of mechanisms of action and its relevance to livestock animals, Anim Genet, vol.49, pp.505-519, 2018.

S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, Basic local alignment search tool, J Mol Biol, vol.215, pp.80360-80362, 1990.

B. Aranda, H. Blankenburg, S. Kerrien, F. Brinkman, A. Ceol et al., PSICQUIC and PSISCORE: accessing and scoring molecular interactions, Nat Methods, vol.8, pp.528-529, 2011.

M. Baik, H. J. Kang, S. J. Park, S. W. Na, M. Piao et al., Molecular mechanisms related to bovine intramuscular fat deposition in the longissimus muscle, J Anim Sci, vol.95, pp.2284-2303, 2017.

P. Bardou, J. Mariette, F. Escudié, C. Djemiel, and C. Klopp, jvenn: an interactive Venn diagram viewer, BMC Bioinformatics, vol.15, 2014.
URL : https://hal.archives-ouvertes.fr/hal-02640484

D. Baron, E. Dubois, A. Bihouée, R. Teusan, M. Steenman et al., Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns, BMC Genomics, vol.12, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00568010

T. Barrett, S. E. Wilhite, P. Ledoux, C. Evangelista, I. F. Kim et al., NCBI GEO: archive for functional genomics data setsupdate, Nucleic Acids Res, vol.41, pp.991-995, 2013.

J. Bazile, B. Picard, C. Chambon, A. Valais, and M. Bonnet, Pathways and biomarkers of marbling and carcass fat deposition in bovine revealed by a combination of gel-based and gel-free proteomic analyses, Meat Sci, vol.156, pp.146-155, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02626230

M. Bonnet, I. Cassar-malek, Y. Chilliard, and B. Picard, Ontogenesis of muscle and adipose tissues and their interactions in ruminants and other species, Animal, vol.4, pp.1093-1109, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02667753

M. Bonnet, Y. Faulconnier, J. Hocquette, F. Bocquier, C. Leroux et al., Nutritional status induces divergent variations of GLUT4 protein content, but not lipoprotein lipase activity, between adipose tissues and muscles in adult cattle, Br J Nutr, vol.92, pp.617-625, 2004.
URL : https://hal.archives-ouvertes.fr/hal-02680426

M. Bonnet, Y. Faulconnier, C. Leroux, C. Jurie, I. Cassar-malek et al., Glucose-6-phosphate dehydrogenase and leptin are related to marbling differences among Limousin and Angus or Japanese Black x Angus steers, J Anim Sci, vol.85, pp.2882-2894, 2007.
URL : https://hal.archives-ouvertes.fr/hal-02653399

P. Casel, F. Moreews, S. Lagarrigue, and C. Klopp, sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters, BMC Proc, vol.3, 2009.

T. M. Casey, J. F. Walker, K. Bhide, J. Thimmapuram, and J. P. Schoonmaker, Global transcriptional differences in myokine and inflammatory genes in muscle of mature steer progeny are related to maternal lactation diet and muscle composition, Physiol Genomics, vol.50, pp.884-892, 2018.

T. Chaze, B. Meunier, C. Chambon, C. Jurie, and B. Picard, In vivo proteome dynamics during early bovine myogenesis, Proteomics, vol.8, pp.4236-4248, 2008.
URL : https://hal.archives-ouvertes.fr/hal-02663688

T. Chaze, B. Meunier, C. Chambon, C. Jurie, and B. Picard, Proteome dynamics during contractile and metabolic differentiation of bovine foetal muscle, Animal, vol.3, pp.980-1000, 2009.
URL : https://hal.archives-ouvertes.fr/hal-02668303

D. L. Clark, D. D. Boler, L. W. Kutzler, K. A. Jones, F. K. Mckeith et al., Muscle gene expression associated with increased marbling in beef cattle, Anim Biotechnol, vol.22, pp.51-63, 2011.

J. D. Covington, J. E. Galgani, C. Moro, J. M. Lagrange, Z. Zhang et al., Skeletal muscle perilipin 3 and coatomer proteins are increased following exercise and are associated with fat oxidation, PLoS One, vol.9, 2014.

S. Dayanidhi and R. L. Lieber, Skeletal muscle satellite cells: mediators of muscle growth during development and implications for developmental disorders, Muscle Nerve, vol.50, pp.723-732, 2014.

S. De and D. Kline, Evidence for the requirement of 14-3-3eta (YWHAH) in meiotic spindle assembly during mouse oocyte maturation, BMC Dev Biol, vol.13, issue.10, 2013.

S. Ding, G. Swennen, T. Messmer, M. Gagliardi, D. Molin et al., Maintaining bovine satellite cells stemness through p38 pathway, Sci Rep, vol.8, 2018.

M. V. Dodson, R. E. Allen, M. Du, W. G. Bergen, S. G. Velleman et al., Evolution of meat animal growth research during the past 50 years, J Anim Sci, vol.93, pp.2014-8221, 2015.

C. Etard, O. Armant, U. Roostalu, V. Gourain, M. Ferg et al., Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells, Genome Biol, vol.16, 2015.

M. Farhadian, S. A. Rafat, K. Hasanpur, and E. Ebrahimie, Transcriptome signature of the lactation process, identified by meta-analysis of microarray and RNA-Seq data, BioTechnologia, vol.99, pp.153-163, 2018.

J. M. Flynn, E. Meadows, M. Fiorotto, and W. H. Klein, Myogenin regulates exercise capacity and skeletal muscle metabolism in the adult mouse, PLoS One, vol.5, 2010.

J. P. Golding, E. Calderbank, T. A. Partridge, and J. R. Beauchamp, Skeletal muscle stem cells express anti-apoptotic ErbB receptors during activation from quiescence, Exp Cell Res, vol.313, pp.341-356, 2007.

T. Gotoh, A. E. Teuscher, F. Kawabata, K. Sakashita, K. Iwamoto et al., Differences in muscle and fat accretion in Japanese Black and European cattle, Meat Sci, vol.82, pp.300-308, 2009.

L. Guo, H. Cui, G. Zhao, R. Liu, Q. Li et al., Intramuscular preadipocytes impede differentiation and promote lipid deposition of muscle satellite cells in chickens, BMC Genomics, vol.19, 2018.

S. W. Han, Y. K. Jung, E. J. Lee, H. R. Park, G. W. Kim et al., DICAM inhibits angiogenesis via suppression of AKT and p38 MAP kinase signalling, Cardiovasc Res, vol.98, pp.73-82, 2013.

H. He and X. Liu, Characterization of transcriptional complexity during longissimus muscle development in bovines using high-throughput sequencing, PLoS One, vol.8, p.64356, 2013.

J. Jeong, J. Bong, G. D. Kim, S. T. Joo, H. J. Lee et al., Transcriptome changes favoring intramuscular fat deposition in the longissimus muscle following castration of bulls, J Anim Sci, vol.91, pp.4692-4704, 2013.

C. Jurie, B. Picard, J. F. Hocquette, E. Dransfield, D. Micol et al., Muscle and meat quality characteristics of Holstein and Salers cull cows, Meat Sci, vol.77, pp.459-466, 2007.
URL : https://hal.archives-ouvertes.fr/hal-02656687

N. Kaspric, B. Picard, M. Reichstadt, J. Tournayre, and M. Bonnet, ProteIN-SIDE to Easily Investigate Proteomics Data from Ruminants: Application to Mine Proteome of Adipose and Muscle Tissues in Bovine Foetuses, PLoS One, vol.10, 2015.

S. M. Keady, D. A. Kenny, K. Ohlendieck, S. Doyle, M. G. Keane et al., Proteomic profiling of bovine M. longissimus lumborum from Crossbred Aberdeen Angus and Belgian Blue sired steers varying in genetic merit for carcass weight, J Anim Sci, vol.91, pp.654-665, 2013.

S. Kersten, Physiological regulation of lipoprotein lipase, Biochim Biophys Acta, vol.1841, pp.919-933, 2014.

D. R. Khan, D. A. Landry, É. Fournier, C. Vigneault, P. Blondin et al., Transcriptome meta-analysis of three follicular compartments and its correlation with ovarian follicle maturity and oocyte developmental competence in cows, Physiol Genomics, vol.48, pp.633-643, 2016.

K. Komolka, S. Ponsuksili, A. E. Kühn, C. Wimmers, K. Maak et al., Gene expression profile of Musculus longissimus dorsi in bulls of a Charolais ? Holstein F2-cross with divergent intramuscular fat content, Genom Data, vol.7, pp.131-133, 2015.

S. H. Lee, E. W. Park, Y. M. Cho, S. K. Kim, J. H. Lee et al., Identification of differentially expressed genes related to intramuscular fat development in the early and late fattening stages of hanwoo steers, J Biochem Mol Biol, vol.40, pp.757-764, 2007.

S. A. Lehnert, A. Reverter, K. A. Byrne, Y. Wang, G. S. Nattrass et al., Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds, BMC Dev Biol, vol.7, p.95, 2007.

S. A. Lehnert, Y. H. Wang, and K. A. Byrne, Development and application of a bovine cDNA microarray for expression profiling of muscle and adipose tissue, Aust J Exp Agric, vol.44, pp.1127-1133, 2004.

Y. H. Li and L. Liu, Apolipoprotein E synthesized by adipocyte and apolipoprotein E carried on lipoproteins modulate adipocyte triglyceride content, Lipids Health Dis, vol.13, 2014.

A. Listrat, B. Lebret, I. Louveau, T. Astruc, M. Bonnet et al., How muscle structure and composition determine meat quality, ScientificWorldJournal, p.3182746, 2016.

G. Marot, J. Foulley, C. Mayer, and F. Jaffrézic, Moderated effect size and P-value combinations for microarray meta-analyses, Bioinformatics, vol.25, pp.2692-2699, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00539379

S. J. Moisá, D. W. Shike, D. E. Graugnard, S. L. Rodriguez-zas, R. E. Everts et al., Bioinformatics analysis of transcriptome dynamics during growth in angus cattle longissimus muscle, Bioinform Biol Insights, vol.7, pp.253-270, 2013.

G. Pallafacchina, B. Blaauw, and S. Schiaffino, Role of satellite cells in muscle growth and maintenance of muscle mass, Nutr Metab Cardiovasc Dis, vol.23, 2013.

H. Parikh, E. Carlsson, W. A. Chutkow, L. E. Johansson, H. Storgaard et al., TXNIP regulates peripheral glucose metabolism in humans, PLoS Med, vol.4, 2007.

J. H. Park, H. J. Kang, S. I. Kang, J. E. Lee, J. Hur et al., A multifunctional protein, EWS, is essential for early brown fat lineage determination, Dev Cell, vol.26, pp.393-404, 2013.

B. Picard, L. Lefaucheur, C. Berri, and M. J. Duclos, Muscle fibre ontogenesis in farm animal species, Reprod Nutr Dev, vol.42, pp.415-431, 2002.
URL : https://hal.archives-ouvertes.fr/hal-00900337

P. P. Purslow, A. C. Archile-contreras, and M. C. Cha, Meat Science and Muscle Biology Symposium: manipulating meat tenderness by increasing the turnover of intramuscular connective tissue, J Anim Sci, vol.90, pp.950-959, 2012.

R. Qi, H. Liu, Q. Wang, J. Wang, F. Yang et al., Expressions and Regulatory Effects of P38/ERK/JNK Mapks in the Adipogenic Trans-Differentiation of C2C12 Myoblasts, Cell Physiol Biochem, vol.44, pp.2467-2475, 2017.

L. Qin, G. Zhang, Y. Cao, J. Zhang, Y. Zhao et al., Microarray Analysis on the Differences of Gene Expression in Longissimus Dorsi Muscle Tissue Between 1 and 24 Months Chinese Red Steppes, J Anim Vet Adv, vol.10, pp.428-436, 2011.

. R-core-team, R: A Language and Environment for Statistical Computing

, R Foundation for Statistical Computing, 2018.

A. Ramasamy, A. Mondry, C. C. Holmes, and D. G. Altman, Key issues in conducting a meta-analysis of gene expression microarray datasets, PLoS Med, vol.5, p.184, 2008.

N. Rifai, M. A. Gillette, and S. A. Carr, Protein biomarker discovery and validation: the long and uncertain path to clinical utility, Nat Biotechnol, vol.24, pp.971-983, 2006.

M. D. Roberts, C. T. Haun, C. B. Mobley, P. W. Mumford, M. A. Romero et al., Physiological differences between low versus high skeletal muscle hypertrophic responders to resistance exercise training: Current perspectives and future research directions, Front Physiol, vol.9, p.83211, 2013.

J. Rung and A. Brazma, Reuse of public genome-wide gene expression data, Nat Rev Genet, vol.14, pp.89-99, 2013.

T. Sadkowski, M. Jank, J. Oprzadek, and T. Motyl, Age-dependent changes in bovine skeletal muscle transcriptomic profile, J Physiol Pharmacol, vol.57, pp.95-110, 2006.

N. M. Schreurs, F. Garcia, C. Jurie, J. Agabriel, D. Micol et al., Meta-analysis of the effect of animal maturity on muscle characteristics in different muscles, breeds, and sexes of cattle, J Anim Sci, vol.86, pp.2872-2887, 2008.
URL : https://hal.archives-ouvertes.fr/hal-02658082

T. J. Schulz, T. L. Huang, T. T. Tran, H. Zhang, K. L. Townsend et al., Identification of inducible brown adipocyte progenitors residing in skeletal muscle and white fat, Proc Natl Acad Sci, vol.108, pp.143-148, 2011.

M. G. Scioli, A. Bielli, P. Gentile, D. Mazzaglia, V. Cervelli et al., The biomolecular basis of adipogenic differentiation of adipose-derived stem cells, Int J Mol Sci, vol.15, pp.6517-6526, 2014.

J. Segalés, E. Perdiguero, and P. Muñoz-cánoves, Regulation of muscle stem cell functions: A focus on the p38 MAPK signaling pathway, Front Cell Dev Biol, vol.4, p.91, 2016.

Y. Shang, X. Xu, X. Duan, J. Guo, Y. Wang et al., Hsp70 and Hsp90 oppositely regulate TGF-? signaling through CHIP/ Stub1, Biochem Biophys Res Commun, vol.446, pp.387-392, 2014.

Y. Song, Function of membrane-associated proteoglycans in the regulation of satellite cell growth, Growth Factors and Cytokines in Skeletal Muscle Development, Growth, Regeneration and Disease, pp.61-95, 2016.

P. J. Tacken, M. H. Hofker, L. M. Havekes, and K. W. Van-dijk, Living up to a name: the role of the VLDL receptor in lipid metabolism, Curr Opin Lipidol, vol.12, pp.275-279, 2001.

H. Taga, M. Bonnet, B. Picard, M. C. Zingaretti, I. Cassar-malek et al., Adipocyte metabolism and cellularity are related to differences in adipose tissue maturity between Holstein and Charolais or Blond d'Aquitaine fetuses, J Anim Sci, vol.89, pp.711-721, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02645397

X. Tang, L. Deng, H. Xiong, G. Li, J. Lin et al., Expression profile of mitrogen-activated protein kinase (MAPK) signaling genes in the skeletal muscle & liver of rat with type 2 diabetes

, Indian J Med Res, vol.140, pp.744-755, 2014.

K. J. Thornton, E. Kamanga-sollo, M. E. White, and W. R. Dayton, Active G protein-coupled receptors (GPCR), matrix metalloproteinases 2/9 (MMP2/ 9), heparin-binding epidermal growth factor (hbEGF), epidermal growth factor receptor (EGFR), erbB2, and insulin-like growth factor 1 receptor (IGF-1R) are necessary for trenbolone acetate-induced alterations in protein turnover rate of fused bovine satellite cell cultures, J Anim Sci, vol.9, pp.2332-2343, 2016.

O. Tiebel, K. Oka, K. Robinson, M. Sullivan, J. Martinez et al., Mouse very low-density lipoprotein receptor (VLDLR): gene structure, tissue-specific expression and dietary and developmental regulation, Atherosclerosis, vol.145, issue.99, pp.68-72, 1999.

F. Tremblay, M. J. Dubois, and A. Marette, Regulation of GLUT4 traffic and function by insulin and contraction in skeletal muscle, Front Biosci, vol.8, pp.1072-1084, 2003.

G. C. Tseng, D. Ghosh, and E. Feingold, Comprehensive literature review and statistical considerations for microarray meta-analysis, Nucleic Acids Res, vol.40, pp.3785-3799, 2012.

M. Vaudel, K. Verheggen, A. Csordas, H. Raeder, F. S. Berven et al., Exploring the potential of public proteomics data, Proteomics, vol.16, pp.214-225, 2016.

Y. H. Wang, N. I. Bower, A. Reverter, S. H. Tan, D. Jager et al., Gene expression patterns during intramuscular fat development in cattle, J Anim Sci, vol.87, pp.119-130, 2009.

Y. H. Yang, S. Dudoit, P. Luu, D. M. Lin, V. Peng et al., Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation, Nucleic Acids Res, vol.30, p.15, 2002.