Controlling basal expression in an inducible T7 expression system by blocking the target T7 promoter with lac repressor, J. Mol. Biol, vol.219, pp.45-59, 1991. ,
Tight transcriptional control mechanism ensures stable high-level expression from T7 promoter-based expression plasmids, Bio/Technology, vol.13, pp.175-179, 1995. ,
Multi-input RNAi-based logic circuit for identification of specific cancer cells, Science, vol.333, pp.1307-1311, 2011. ,
Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems, Proc. Natl. Acad. Sci. USA, vol.107, pp.8531-8536, 2010. ,
Environmentally controlled invasion of cancer cells by engineered bacteria, J. Mol. Biol, vol.355, pp.619-627, 2006. ,
Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen, Mol. Syst. Biol, vol.7, p.521, 2011. ,
Engineering the Salmonella type III secretion system to export spider silk monomers, Mol. Syst. Biol, vol.5, p.309, 2009. ,
Rewritable digital data storage in live cells via engineered control of recombination directionality, Proc. Natl. Acad. Sci. USA, vol.109, pp.8884-8889, 2012. ,
Synthetic biology moving into the clinic, Science, vol.333, pp.1248-1252, 2011. ,
Reprogramming bacteria to seek and destroy an herbicide, Nat. Chem. Biol, vol.6, pp.464-470, 2010. ,
Manufacturing molecules through metabolic engineering, Science, vol.330, pp.1355-1358, 2010. ,
Genome engineering, Nat. Biotechnol, vol.27, pp.1151-1162, 2009. ,
Foundations for engineering biology, Nature, vol.438, pp.449-453, 2005. ,
Toward rational design of bacterial genomes, Curr. Opin. Microbiol, vol.14, pp.624-630, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02650917
Contextualizing context for synthetic biologyidentifying causes of failure of synthetic biological systems, Biotechnol. J, vol.7, pp.856-866, 2012. ,
Mining and engineering natural-product biosynthetic pathways, Nat. Chem. Biol, vol.3, pp.379-386, 2007. ,
Refinement and standardization of synthetic biological parts and devices, Nat. Biotechnol, vol.26, pp.787-793, 2008. ,
Building outside of the box: iGEM and the BioBricks Foundation, Nat. Biotechnol, vol.27, pp.1099-1102, 2009. ,
Eurocodes: using reliability analysis to combine action effects, Proceedings of the ICE -Structures and Buildings, vol.158, pp.243-252, 2005. ,
Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica, J. Bacteriol, vol.191, pp.7279-7287, 2009. ,
Transcription initiation by mix and match elements: flexibility for polymerase binding to bacterial promoters, Gene Regul. Syst. Bio, vol.1, pp.275-293, 2007. ,
Classification and strength measurement of stationaryphase promoters by use of a newly developed promoter cloning vector, J. Bacteriol, vol.186, pp.7112-7122, 2004. ,
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli, Nat. Methods, vol.3, pp.623-628, 2006. ,
Synthetic RNA modules for fine-tuning gene expression levels in yeast by modulating RNase III activity, Nucleic Acids Res, vol.39, pp.8651-8664, 2011. ,
Interdependence of translation, transcription and mRNA degradation in the lacZ gene, J. Mol. Biol, vol.226, pp.581-596, 1992. ,
Sequence changes preceding a Shine-Dalgarno region influence trpE mRNA translation and decay, J. Mol. Biol, vol.204, pp.51-60, 1988. ,
Sequences linked to prokaryotic promoters can affect the efficiency of downstream termination sites, J. Mol. Biol, vol.205, pp.315-330, 1989. ,
Contextdependent effects of upstream A-tracts -stimulation or inhibition of Escherichia coli promoter function, J. Mol. Biol, vol.239, pp.466-475, 1994. ,
Transcription from efficient promoters can interfere with plasmid replication and diminish expression of plasmid specified genes, EMBO J, vol.1, pp.1399-1404, 1982. ,
Quantitative analysis of ribosome binding sites in E.coli, Nucleic Acids Res, vol.22, pp.1287-1295, 1994. ,
Programming gene expression with combinatorial promoters, Mol. Syst. Biol, vol.3, p.145, 2007. ,
Tuning genetic control through promoter engineering, Proc. Natl. Acad. Sci. USA, vol.102, pp.12678-12683, 2005. ,
Diversity-based, model-guided construction of synthetic gene networks with predicted functions, Nat. Biotechnol, vol.27, pp.465-471, 2009. ,
Parameters affecting transcription termination by Escherichia coli RNA: II. Construction and analysis of hybrid terminators, J. Mol. Biol, vol.224, pp.53-63, 1992. ,
Library of synthetic 5? secondary structures to manipulate mRNA stability in Escherichia coli, Biotechnol. Prog, vol.15, pp.58-64, 1999. ,
Automated design of synthetic ribosome binding sites to control protein expression, Nat. Biotechnol, vol.27, pp.946-950, 2009. ,
Rationally designed families of orthogonal RNA regulators of translation, Nat. Chem. Biol, vol.8, pp.447-454, 2012. ,
A synthetic biology framework for programming eukaryotic transcription functions, Cell, vol.150, pp.647-658, 2012. ,
The second wave of synthetic biology: from modules to systems, Nat. Rev. Mol. Cell Biol, vol.10, pp.410-422, 2009. ,
Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data, J. Mol. Biol, vol.244, pp.144-150, 1994. ,
Quantitative sequence-activity models (QSAM)-tools for sequence design, Nucleic Acids Res, vol.21, pp.733-739, 1993. ,
A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli, Biochemistry, vol.30, pp.1097-1118, 1991. ,
Design, construction and characterization of a set of insulated bacterial promoters, Nucleic Acids Res, vol.39, pp.1131-1141, 2011. ,
RNA processing enables predictable programming of gene expression, Nat. Biotechnol, vol.30, pp.1002-1006, 2012. ,
Ribozyme-based insulator parts buffer synthetic circuits from genetic context, Nat. Biotechnol, vol.30, pp.1137-1142, 2012. ,
Growth rate-dependent global effects on gene expression in bacteria, Cell, vol.139, pp.1366-1375, 2009. ,
Precise and reliable gene expression via standard transcription and translation initiation elements, Nat. Methods advance online publication, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02652723
Measuring the activity of BioBrick promoters using an in vivo reference standard, J. Biol. Eng, vol.3, p.4, 2009. ,
Successes and failures in modular genetic engineering, Curr. Opin. Chem. Biol, vol.16, pp.329-336, 2012. ,
Experiments: Planning, Analysis, and Optimization, 2009. ,
Short Protocols in Molecular Biology, 2002. ,
A one pot, one step, precision cloning method with high throughput capability, PLoS ONE, vol.3, p.3647, 2008. ,
j5 DNA assembly design automation software, ACS Synth. Biol, vol.1, pp.14-21, 2012. ,
Engineering and characterization of a superfolder green fluorescent protein, Nat. Biotechnol, vol.24, pp.79-88, 2006. ,
A monomeric red fluorescent protein, Proc. Natl. Acad. Sci. USA, vol.99, pp.7877-7882, 2002. ,
BglBrick vectors and datasheets: a synthetic biology platform for gene expression, J. Biol. Eng, vol.5, p.12, 2011. ,
Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria, J. Bacteriol, vol.183, pp.6384-6393, 2001. ,
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I 1 -I 2 regulatory elements, Nucleic Acids Res, vol.25, pp.1203-1210, 1997. ,
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection, Mol. Syst. Biol, vol.2, p.8, 2006. ,
Predictive and interpretive simulation of green fluorescent protein expression in reporter bacteria, J. Bacteriol, vol.183, pp.6752-6762, 2001. ,
Kinetic study of de novo chromophore maturation of fluorescent proteins, Anal. Biochem, vol.414, pp.173-178, 2011. ,
flowClust: a Bioconductor package for automated gating of flow cytometry data, BMC Bioinformatics, vol.10, p.145, 2009. ,
Experimental design for gene expression microarrays, Biostatistics, vol.2, pp.183-201, 2001. ,
Analysis of variance for gene expression microarray data, J. Comput. Biol, vol.7, pp.819-837, 2000. ,
Translation initiation in Escherichia coli: sequences within the ribosome-binding site, Mol. Microbiol, vol.6, pp.1219-1229, 1992. ,
Transcriptional interference-a crash course, Trends Genet, vol.21, pp.339-345, 2005. ,