?HOPE: A Python just-in-time compiler for astrophysical computations, Astronomy and Computing. Elsevier B.V, vol.10, pp.1-8, 2015. ,
?Object-Oriented Programming via Fortran 90/95', Object-Oriented Programming via Fortran 90/95, 2003. ,
?Can growing degree days and photoperiod predict spring wheat phenology?, pp.1-10, 2017. ,
?Uncertainty in simulating wheat yields under climate change, Nature Climate Change, vol.3, issue.9, pp.827-832, 2013. ,
?Enriching environmental software model interfaces through ontology-based tools, International Journal of Applied Systemic Studies, vol.4, issue.1-2, pp.94-105, 2011. ,
?A roadmap to domain specific programming languages for environmental modeling: Key requirements and concepts, DSM 2013 -Proceedings of the 2013 ACM Workshop on Domain-Specific Modeling, pp.27-32, 2013. ,
, Mathematical Markup Language Specification TA -Ausbrooks, Ron, 0(October), vol.2, pp.0-385, 2003.
CellML 1.1 Specification, p.20, 2006. ,
?DMS®: Program transformations for practical scalable software evolution, Proceedings -International Conference on Software Engineering, vol.26, pp.625-634, 2004. ,
, The Best of Both Worlds, vol.13, pp.31-39, 2011.
, The best of both worlds Stefan, vol.13, pp.32-36, 2000.
, by INRAE Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement user on 09, 2020.
?A new plug-in under RECORD to link biophysical and decision models for crop management', Agronomy for Sustainable Development. Agronomy for Sustainable Development, vol.36, pp.1-8, 2016. ,
?Modelling climate change impacts on crop production for food security, Climate Research, vol.65, pp.3-5, 2014. ,
?STICS: a generic model for the simulation of crops and their water and nitrogen balances. I. Theory and parameterization applied to wheat and corn, Agronomie, vol.18, pp.311-346, 1998. ,
, ?Plant Modelling Framework: Software for building and running crop models on the APSIM platform', Environmental Modelling and Software, vol.62, pp.385-398, 2014.
?Crop model improvement in APSIM: Using wheat as a case study, European Journal of Agronomy, vol.100, pp.141-150, 2018. ,
?Migrating legacy fortran to python while retaining fortran-level performance through transpilation and type hints, Proceedings of PyHPC 2016: 6th Workshop on Python for High-Performance and Scientific Computing -Held in conjunction with SC16: The International Conference for High Performance Computing, Networking, Storage and Analysis, pp.9-18, 2017. ,
?Comparison of C++ and Fortran 90 for object-oriented scientific programming, Computer Physics Communications, vol.105, issue.1, pp.20-36, 1997. ,
?A Component-Based Framework for Simulating Agricultural Production and Externalities, Environmental and Agricultural Modeling, pp.63-108, 2010. ,
?A generic framework for evaluating hybrid models by reuse and composition -A case study on soil temperature simulation, 2014. ,
, , vol.62, pp.478-486
?The IMPETUS Spatial Decision Support Systems', in Impacts of Global Change on the Hydrological Cycle in West and Northwest Africa, 2010. ,
, , pp.360-393
?Convergence in integrated modeling frameworks, MODSIM05 -International Congress on Modelling and Simulation: Advances and Applications for Management and Decision Making, Proceedings, pp.745-750, 2005. ,
?AutoWIG: Automatic Generation of Python Bindings for C++ Libraries, 2017. ,
, ?Design Patterns: Elements of Reusable Object-Oriented Software, 1995.
2019) ?Current knowledge and future research opportunities for modeling annual crop mixtures. A review', Agronomy for Sustainable Development, vol.39, p.20 ,
, PLoS Computational Biology, vol.6, issue.6, pp.1-19, 2010.
2012) ?Simulation of environmental and genotypic variations of final leaf number and anthesis date for wheat, European Journal of Agronomy. Elsevier B.V, vol.42, pp.22-33 ,
?APSIM Next Generation: Overcoming challenges in modernising a farming systems model, Environmental Modelling & Software, vol.103, pp.43-51, 2018. ,
?Agricultural production systems modelling and software: Current status and future prospects', Environmental Modelling and Software, vol.72, pp.276-286, 2014. ,
?APSIM -Evolution towards a new generation of agricultural systems simulation', Environmental Modelling and Software, vol.62, pp.327-350, 2014. ,
?The DSSAT crop modeling ecosystem, pp.173-216, 2019. ,
?Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative, Frontiers in Bioengineering and Biotechnology, vol.3, pp.1-6, 2015. ,
The DSSAT cropping system model, European Journal of Agronomy. doi, 2003. ,
?Brief history of agricultural systems modeling, Agricultural Systems, 2017. ,
, , vol.155, pp.240-254
, ?Jupyter Notebooks-a publishing format for reproducible computational workflows', Positioning and Power in Academic Publishing: Players, Agents and Agendas, pp.87-90, 2016.
?WISS a Java Continuous Simulation Framework for Agro-Ecological Modelling, pp.242-248, 2020. ,
?yggdrasil: a Python package for integrating computational models across languages and scales', in silico Plants, p.1, 2019. ,
Programming for Computations -Python, Texts in Computational Science and Engineering, 2016. ,
2019) ?Estimation of plant and canopy architectural traits using the digital plant phenotyping platform1, Plant Physiology, issue.3, p.181 ,
, , 2018.
?Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform, Frontiers in Plant Science, vol.8, pp.1-7, 2017. ,
?Modelling protein content and composition in relation to crop nitrogen dynamics for wheat, European Journal of Agronomy, vol.25, issue.2, pp.138-154, 2006. ,
?The agricultural model exchange initiative, by INRAE Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement user on, 2018. ,
,
2020) ?Crop2ML: The centralized framework for crop model component exchange and reuse ,
2019) ?Illicium A modular transpilation toolchain from Pharo to C ,
?Plant and crop simulation models: powerful tools to link physiology, genetics, and phenomics, Journal of Experimental Botany, vol.70, issue.9, pp.2339-2344, 2019. ,
?Simulation of winter wheat yield and its variability in different climates of Europe: A comparison of eight crop growth models, European Journal of Agronomy, vol.35, issue.3, pp.103-114, 2011. ,
?Write-once, transpile-everywhere: re-using motion controllers of virtual humans across multiple game engines, pp.1-1, 2018. ,
?Source-to-Source Translation and Software Engineering, Journal of Software Engineering and Applications, issue.04, pp.30-40, 2013. ,
?OpenAlea: A visual programming and component-based software platform for plant modelling, Functional Plant Biology, vol.35, issue.10, pp.751-760, 2008. ,
?OpenAlea : Scientific Workflows Combining Data Analysis and Simulation To cite this version : HAL Id : hal-01166298 OpenAlea : Scientific Workflows Combining Data Analysis and Simulation, 2015. ,
?The ROSE Source-to-Source Compiler Infrastructure, International Journal, pp.1-3, 2011. ,
?R: A Language and Environment for Statistical Computing, 2017. ,
Agricultural and Forest Meteorology, ?The Agricultural Model Intercomparison and Improvement Project (AgMIP): Protocols and pilot studies, vol.170, pp.166-182, 2013. ,
?Crop-climate models need an overhaul', Nature Climate Change, Nature Publishing Group, vol.1, issue.4, pp.175-177, 2011. ,
?A semantic approach for timeseries data fusion', Computers and Electronics in Agriculture, p.105171, 2019. ,
) ?The design and evaluation of an interoperable translation system for object-oriented software reuse, Journal of Object Technology, vol.15, issue.4, pp.1-33, 2016. ,
, Conversion of CellML into SBML', Bioinformatics, vol.2, pp.1018-1020, 2006.
?Integrating modelling architecture: A declarative framework for multi-paradigm, multi-scale ecological modelling, Ecological Modelling, vol.137, issue.1, pp.23-42, 2001. ,
?Semantics for interoperability of distributed data and models: Foundations for better-connected information, F1000Research, vol.6, issue.2, p.686, 2017. ,
?25 years of the WOFOST cropping systems model, Agricultural Systems, 2019. ,
, , vol.168, pp.154-167, 2017.
?A SIMPLE crop model, European Journal of Agronomy, vol.104, pp.97-106, 2019. ,