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Prediction of genomic breeding values for growth, carcass and meat quality traits in a multi-breed sheep population using a HD SNP chip, BMC Genet, vol.18, 2017. ,
Characterization of linkage disequilibrium, consistency of gametic phase and admixture in Australian and Canadian goats, BMC Genet, vol.16, p.67, 2015. ,
Long homozygous chromosomal segments in reference families from the Centre d'Étude du Polymorphisme Humain, Am. J. Hum. Genet, vol.65, pp.1493-1500, 1999. ,
Genomic prediction based on data from three layer lines: A comparison between linear methods, Genet. Sel. Evol, vol.46, p.57, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01341237
Accuracy of genomic selection using different methods to define haplotypes, Genetics, vol.178, pp.553-561, 2008. ,
A first step toward genomic selection in the multi-breed French dairy goat population, J. Dairy Sci, vol.96, pp.7294-7305, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02651011
Comparison of joint versus purebred genomic evaluation in the French multibreed dairy goat population, Genet. Sel. Evol, vol.46, p.67, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01341244
Genomic prediction when some animals are not genotyped, Genet. Sel. Evol, vol.42, issue.2, 2010. ,
Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population, BMC Genomics, vol.15, p.1171, 2014. ,
Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle, Genetics, vol.179, pp.1503-1512, 2008. ,
The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds, Genet. Sel. Evol, vol.51, p.52, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02300856
Effects of selective genotyping and selective imputation in single-step, GBLUP. Interbull Bull, vol.51, pp.22-25, 2017. ,
Comparison between haplotype-based and individual snp-based genomic predictions for beef fatty, 2020. ,
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Study of the optimum haplotype length to build genomic relationship matrices, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01479279
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A Mendelian polymorphism underlying quantitative variations of goat ? S1 -casein, Genet. Sel. Evol, vol.19, pp.399-412, 1987. ,
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Fixed-length haplotypes can improve genomic prediction accuracy in an admixed dairy cattle population, Genet. Sel. Evol, vol.49, p.54, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01555253
Genomic evaluations using similarity between haplotypes, J. Anim. Breed. Genet, vol.130, pp.1299-1320, 2005. ,
Alternative haplotype construction methods for genomic evaluation, J. Dairy Sci, vol.99, pp.4537-4546, 2016. ,
Assessing haplotype-based models for genomic evaluation in Holstein cattle. Can, J. Anim. Sci, vol.98, pp.750-759, 2018. ,
National genetic evaluations in dairy sheep and goats in France. Page 62, Proc. Annual Meeting of the European Federation of Animal Science (EAAP), 2011. ,
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A relationship matrix including full pedigree and genomic information, J. Dairy Sci, vol.92, pp.4656-4663, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02668784
Effect of genomic selection on rate of inbreeding and coancestry and effective population size of Holstein and Jersey cattle populations, J. Dairy Sci, vol.103, pp.5183-5199, 2020. ,
A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content, Sci. Rep, vol.7, p.1872, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02622800
type and mammary health traits in French dairy goats identifies a pleiotropic region on chromosome 19 in the Saanen breed, GENOMIC PREDICTION IN DAIRY GOATS Journal of Dairy Science, vol.103, issue.12, pp.5214-5226, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02627638
On the distance of genetic relationships and the accuracy of genomic prediction in pig breeding, Genet. Sel. Evol, vol.46, p.49, 2014. ,
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Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information, J. Dairy Sci, vol.92, pp.4648-4655, 2009. ,
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Manual for BLUPF90 Family of Programs, 2016. ,
Comparison of genomic prediction methods for evaluation of adaptation and productive efficiency traits in Braford and Hereford cattle, Livest. Sci, vol.231, p.103864, 2020. ,
PLINK: A tool set for whole-genome association and population-based linkage analyses, Am. J. Hum. Genet, vol.81, pp.559-575, 2007. ,
Computation of deregressed proofs for genomic selection when own phenotypes exist with an application in French show-jumping horses, J. Anim. Sci, vol.91, pp.1076-1085, 2013. ,
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Linkage disequilibrium between loci with unknown phase, Genetics, vol.182, pp.839-844, 2009. ,
Genomic application in sheep and goat breeding, Anim. Front, vol.6, pp.39-44, 2016. ,
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A new approach for efficient genotype imputation using information from relatives, BMC Genomics, vol.15, p.478, 2014. ,
Population structure and genomic inbreeding in nine Swiss dairy cattle populations, Genet. Sel. Evol, vol.49, p.83, 2017. ,
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Weighted single-step genomic BLUP improves accuracy of genomic breeding values for protein content in French dairy goats: a quantitative trait influenced by a major gene, Genet. Sel. Evol, vol.50, p.31, 2018. ,
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Accuracy of genomic evaluation with weighted single-step genomic best linear unbiased prediction for milk production traits, udder type traits, and somatic cell scores in French dairy goats, J. Dairy Sci, vol.102, pp.2018-15650, 2019. ,
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Design and characterization of a 52K SNP chip for goats, PLoS One, vol.9, 2014. ,
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Genomic evaluation using SNP-and haplotype-based genomic relationship matrices in a closed line of Duroc pigs, Anim. Sci. J, vol.88, pp.1465-1474, 2017. ,
Efficient methods to compute genomic predictions, J. Dairy Sci, vol.91, pp.4414-4423, 2008. ,
Derivation, calculation, and use of national animal model information, J. Dairy Sci, vol.74, issue.91, pp.78453-78454, 1991. ,
Genome-wide association mapping including phenotypes from relatives without genotypes, Genet. Res. (Camb.), vol.94, pp.73-83, 2012. ,
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Weighting strategies for single-step genomic BLUP: An iterative approach for accurate calculation of GEBV and GWAS, Front. Genet, vol.7, p.151, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01602498
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URL : https://hal.archives-ouvertes.fr/hal-02625689