A. Abe, S. Kosugi, K. Yoshida, S. Natsume, and H. Takagi, Genome sequencing reveals 634 agronomically important loci in rice using MutMap, Nat Biotech, vol.30, pp.174-178, 2012.

H. Adoukonou-sagbadja, C. Wagner, A. Dansi, J. Ahlemeyer, and O. Daïnou, Genetic 636 diversity and population differentiation of traditional fonio millet (Digitaria spp.) 637 landraces from different agro-ecological zones of West Africa, Theor. Appl. Genet, vol.115, pp.638-917, 2007.

J. A. Aguirre-liguori, M. I. Tenaillon, A. Vázquez-lobo, B. S. Gaut, and J. P. Jaramillo-correa, Connecting genomic patterns of local adaptation and niche suitability in 641 teosintes, Mol. Ecol, vol.26, pp.4226-4240, 2017.

M. C. Arteaga, A. Moreno-letelier, A. Mastretta-yanes, A. Vázquez-lobo, and A. Breña-ochoa-643, Genomic variation in recently collected maize landraces from Mexico, Genomics Data, vol.644, pp.38-45, 2016.

G. Backes, B. Hatz, A. Jahoor, and G. Fischbeck, RFLP diversity within and between 646 major groups of barley in Europe, Plant Breed, vol.122, pp.291-299, 2003.

L. F. Barcellos, W. Klitz, L. L. Field, R. Tobias, and A. M. Bowcock, Association 648 Mapping of Disease Loci, by Use of a Pooled DNA Genomic Screen, Am. J. Hum, 1997.

. Genet, , vol.61, pp.734-747

A. E. Baum, N. Akula, M. Cabanero, I. Cardona, and W. Corona, A genome-wide 651 association study implicates diacylglycerol kinase eta (DGKH) and several other genes 652 in the etiology of bipolar disorder, Mol. Psychiatry, vol.13, pp.197-207, 2007.

R. Bhattacharjee, P. Bramel, C. Hash, M. Kolesnikova-allen, and I. Khairwal, 654 Assessment of genetic diversity within and between pearl millet landraces, Theor. Appl. 655 Genet, vol.105, pp.666-673, 2002.

S. Bouchet, B. Servin, P. Bertin, D. Madur, and V. Combes, Adaptation of maize to 657 temperate climates: mid-density genome-wide association genetics and diversity 658 patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) 659 locus, PloS One, vol.8, p.71377, 2013.

P. C. Brauner, W. Schipprack, H. F. Utz, E. Bauer, and M. Mayer, Testcross 661 performance of doubled haploid lines from European flint maize landraces is promising 662 for broadening the genetic base of elite germplasm, Theor. Appl. Genet, vol.132, pp.1897-663, 1908.

G. Breen, P. Sham, T. Li, D. Shaw, and D. A. Collier, Accuracy and sensitivity of DNA 665 pooling with microsatellite repeats using capillary electrophoresis, Mol. Cell. Probes, vol.666, pp.359-365, 1999.

J. Brohede, PPC: an algorithm for accurate estimation of SNP allele frequencies in small 668 equimolar pools of DNA using data from high density microarrays, Nucleic Acids Res, vol.669, pp.142-142, 2005.

L. Camus-kulandaivelu, Maize Adaptation to Temperate Climate: Relationship Between 671 Population Structure and Polymorphism in the Dwarf8 Gene, Genetics, vol.172, pp.2449-2463, 2006.

A. G. Clark, M. J. Hubisz, C. D. Bustamante, S. H. Williamson, and R. Nielsen, 673 Ascertainment bias in studies of human genome-wide polymorphism, Genome Res, vol.15, pp.674-1496, 2005.

D. W. Craig, M. J. Huentelman, D. Hu-lince, V. L. Zismann, and M. C. Kruer, 676 Identification of disease causing loci using an array-based genotyping approach on 677 pooled DNA, BMC Genomics, vol.6, p.138, 2005.

J. Daniels, P. Holmans, N. Williams, D. Turic, and P. Mcguffin, A simple method for 679 analyzing microsatellite allele image patterns generated from DNA pools and its 680 application to allelic association studies, Am. J. Hum. Genet, vol.62, pp.1189-1197, 1998.

J. S. Dias, M. B. Lima, K. M. Song, A. A. Monteiro, and P. H. Williams, Molecular 682 taxonomy of Portuguese tronchuda cabbage and kale landraces using nuclear RFLPs, Euphytica, vol.683, pp.221-229, 1991.

I. Divaret, E. Margalé, and G. Thomas, RAPD markers on seed bulks efficiently assess 685 the genetic diversity of a Brassica oleracea L. collection, Theor. Appl. Genet, vol.98, pp.1029-686, 1999.

P. Dubreuil and A. Charcosset, Genetic diversity within and among maize populations: 688 a comparison between isozyme and nuclear RFLP loci, Theor. Appl. Genet, vol.96, pp.577-689, 1998.

P. Dubreuil, C. Rebourg, M. Merlino, and A. Charcosset, Evaluation of a DNA pooled-691 sampling strategy for estimating the RFLP diversity of maize populations, Plant Mol, vol.692, pp.123-138, 1999.

P. Dubreuil, M. Warburton, M. Chastanet, D. Hoisington, and A. Charcosset, More on 694 the introduction of temperate maize into Europe: Large-scale bulk SSR genotyping and 695 new historical elements, Maydica, vol.51, pp.281-291, 2006.

M. G. Elferink, H. Megens, A. Vereijken, X. Hu, and R. P. Crooijmans, 697 Signatures of Selection in the Genomes of Commercial and Non-Commercial Chicken 698 Breeds, PLoS ONE, vol.7, p.32720, 2012.

T. W. Eschholz, P. Stamp, R. Peter, J. Leipner, and A. Hund, Genetic structure and history 700 of Swiss maize (Zea mays L. ssp. mays) landraces, Genet. Resour. Crop Evol, vol.57, pp.71-701, 2010.

A. R. Fernie, Y. Tadmor, and D. Zamir, Natural genetic variation for improving crop 703 quality, Curr. Opin. Plant Biol, vol.9, pp.196-202, 2006.

B. V. Ford-lloyd, H. J. Newbury, M. T. Jackson, and P. S. Virk, Genetic basis for co-705 adaptive gene complexes in rice, Oryza sativa L.) landraces. Heredity, vol.87, pp.530-536, 2001.

E. Frascaroli, T. A. Schrag, and A. E. Melchinger, Genetic diversity analysis of elite 707 European maize (Zea mays L.) inbred lines using AFLP, SSR, and SNP markers reveals 708 ascertainment bias for a subset of SNPs, Theor. Appl. Genet, vol.126, pp.133-141, 2013.

A. Gallais, L. Moreau, and A. Charcosset, Detection of marker-QTL associations by 710 studying change in marker frequencies with selection, Theor. Appl. Genet, vol.114, pp.669-711, 2007.

M. W. Ganal, G. Durstewitz, A. Polley, A. Bérard, and E. S. Buckler, A Large Maize 713 (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and 714 Genetic Mapping to Compare with the B73 Reference Genome, PLoS, vol.715, p.28334, 2011.

P. Gauthier, B. Gouesnard, J. Dallard, R. Redaelli, and C. Rebourg, RFLP diversity and 717 relationships among traditional European maize populations, Theor Appl Genet, vol.105, p.718, 2002.

M. Gautier, J. Foucaud, K. Gharbi, T. Cézard, and M. Galan, Estimation of population 719 allele frequencies from next-generation sequencing data: pool-versus individual-based 720 genotyping, Mol. Ecol, vol.22, pp.3766-3779, 2013.

J. C. Glaubitz, T. M. Casstevens, F. Lu, J. Harriman, and R. J. Elshire, TASSEL-GBS: 722 A High Capacity Genotyping by Sequencing Analysis Pipeline, 2014.

, PLoS ONE, vol.9, p.90346

J. Hagenblad, J. Zie, and M. W. Leino, Exploring the population genetics of genebank 725 and historical landrace varieties, Genet. Resour. Crop Evol, vol.59, pp.1185-1199, 2012.

M. T. Hamblin, M. L. Warburton, and E. S. Buckler, Empirical Comparison of Simple 727 Sequence Repeats and Single Nucleotide Polymorphisms in Assessment of Maize 728 Diversity and Relatedness, PLoS ONE, vol.2, p.1367, 2007.

J. Van-heerwaarden, J. Doebley, W. H. Briggs, J. C. Glaubitz, and M. M. Goodman, 730 Genetic signals of origin, spread, and introgression in a large sample of maize landraces, 2011.

, Proc. Natl. Acad. Sci, vol.108, pp.1088-1092

D. Hoisington, M. Khairallah, T. Reeves, J. Ribaut, and B. Skovmand, Plant genetic 733 resources: What can they contribute toward increased crop productivity?, Proc. Natl, 1999.

. Acad and . Sci, , vol.96, pp.5937-5943

A. C. Hölker, M. Mayer, T. Presterl, T. Bolduan, and E. Bauer, European maize 736 landraces made accessible for plant breeding and genome-based studies, Theor. Appl. 737 Genet, vol.132, pp.3333-3345, 2019.

B. Hoogendoorn, N. Norton, G. Kirov, N. Williams, and M. Hamshere, Cheap, accurate 739 and rapid allele frequency estimation of single nucleotide polymorphisms by primer 740 extension and DHPLC in DNA pools, Hum. Genet, vol.107, pp.488-493, 2000.

D. Inghelandt, J. C. Reif, B. S. Dhillon, P. Flament, and A. E. Melchinger, Extent and 742 genome-wide distribution of linkage disequilibrium in commercial maize germplasm, 2011.

, Theor. Appl. Genet, vol.123, pp.11-20

A. Jawaid and P. Sham, Impact and Quantification of the Sources of Error in DNA 745 Pooling Designs, Ann. Hum. Genet, vol.73, pp.118-124, 2009.

S. E. Johnston, M. Lindqvist, E. Niemelä, P. Orell, and J. Erkinaro, Fish scales and SNP 747 chips: SNP genotyping and allele frequency estimation in individual and pooled DNA 748 from historical samples of Atlantic salmon (Salmo salar), BMC Genomics, vol.14, p.439, 2013.

B. Kilian and A. Graner, NGS technologies for analyzing germplasm diversity in 750 genebanks*, Brief. Funct. Genomics, vol.11, pp.38-50, 2012.

G. Kirov, I. Nikolov, L. Georgieva, V. Moskvina, and M. J. Owen, Pooled DNA 752 genotyping on Affymetrix SNP genotyping arrays, BMC Genomics, vol.7, p.27, 2006.

H. Lam, X. Xu, X. Liu, W. Chen, and G. Yang, Resequencing of 31 wild and 754 cultivated soybean genomes identifies patterns of genetic diversity and selection, Nat. 755 Genet, vol.42, pp.1053-1059, 2010.

G. Laval, M. Sancristobal, and C. Chevalet, Measuring genetic distances between breeds: 757 use of some distances in various short term evolution models, Genet. Sel. Evol, vol.34, pp.481-758, 2002.

L. Hellard, S. , S. J. Ballereau, P. M. Visscher, H. S. Torrance et al., SNP 760 genotyping on pooled DNAs: comparison of genotyping technologies and a semi 761 automated method for data storage and analysis, Nucleic Acids Res, vol.30, pp.74-74, 2002.

C. Leduc, P. Miller, J. Lichter, and P. Parry, Batched analysis of genotypes, Genome 763 Res, vol.4, pp.331-336, 1995.

E. Lipkin, M. O. Mosig, A. Darvasi, E. Ezra, and A. Shalom, Quantitative trait locus 765 mapping in dairy cattle by means of selective milk DNA pooling using dinucleotide 766 microsatellite markers: analysis of milk protein percentage, Genetics, vol.149, pp.1557-1567, 1998.

K. Liu, M. Goodman, S. Muse, J. S. Smith, and E. Buckler, Genetic structure and 768 diversity among maize inbred lines as inferred from DNA microsatellites, Genetics, vol.165, pp.769-2117, 2003.

M. Mascher, M. Schreiber, U. Scholz, A. Graner, and J. C. Reif, Genebank genomics 771 bridges the gap between the conservation of crop diversity and plant breeding, Nat. 772 Genet, vol.51, pp.1076-1081, 2019.

S. R. Mccouch, K. L. Mcnally, W. Wang, and R. Hamilton, Genomics of gene 774 banks: A case study in rice, Am. J. Bot, vol.99, pp.407-423, 2012.

S. R. Mccouch, K. Zhao, M. Wright, C. Tung, and K. Ebana, Development of 776 genome-wide SNP assays for rice, Breed. Sci, vol.60, pp.524-535, 2010.

C. Mir, T. Zerjal, V. Combes, F. Dumas, and D. Madur, Out of America: tracing the 778 genetic footprints of the global diffusion of maize, Theor. Appl. Genet, vol.126, pp.2671-2682, 2013.

M. Moragues, J. Comadran, R. Waugh, I. Milne, and A. J. Flavell, Effects of 780 ascertainment bias and marker number on estimations of barley diversity from high-781 throughput SNP genotype data, Theor. Appl. Genet, vol.120, pp.1525-1534, 2010.

R. Nielsen, Population genetic analysis of ascertained SNP data, Hum Genomics, vol.1, pp.218-783, 2004.

M. Ozerov, A. Vasemägi, V. Wennevik, R. Diaz-fernandez, and M. Kent, , p.785, 2013.

, Markers That Make a Difference: DNA Pooling and SNP-Arrays Identify Population 786 Informative Markers for Genetic Stock Identification, PLoS ONE, vol.8, p.82434

H. K. Parzies, W. Spoor, and R. A. Ennos, Genetic diversity of barley landrace accessions 789 (Hordeum vulgare ssp. vulgare) conserved for different lengths of time in ex situ gene 790 banks, Heredity, vol.84, pp.476-486, 2000.

B. L. Peiris, J. Ralph, S. J. Lamont, and J. C. Dekkers, Predicting allele frequencies 792 in DNA pools using high density SNP genotyping data, Anim. Genet, vol.42, pp.113-116, 2011.

M. W. Perlin, G. Lancia, and S. Ng, Toward fully automated genotyping: genotyping 794 microsatellite markers by deconvolution, Am. J. Hum. Genet, vol.57, p.1199, 1995.

Z. H. Pervaiz, M. A. Rabbani, I. Khaliq, S. R. Pearce, and S. A. Malik, Genetic diversity 796 associated with agronomic traits using microsatellite markers in Pakistani rice 797 landraces, Electron J Biotechnol, vol.13, 2010.

F. Pupilli, P. Labombarda, C. Scotti, and S. Arcioni, RFLP analysis allows for the 799 identification of alfalfa ecotypes, Plant Breed, vol.119, pp.271-276, 2000.

A. Rafalski, Applications of single nucleotide polymorphisms in crop genetics, Curr Opin 801 Plant Biol, vol.5, pp.94-100, 2002.

C. Rebourg, M. Chastanet, B. Gouesnard, C. Welcker, and P. Dubreuil, Maize 803 introduction into Europe: the history reviewed in the light of molecular data, Theor Appl 804 Genet, vol.106, pp.895-903, 2003.

C. Rebourg, P. Dubreuil, and A. Charcosset, Genetic diversity among maize populations: 806 bulk RFLP analysis of 65 accessions, Maydica, vol.44, pp.237-249, 1999.

C. Rebourg, B. Gouesnard, and A. Charcosset, Large scale molecular analysis of 808 traditional European maize populations. Relationships with morphological variation, Heredity, vol.809, pp.574-587, 2001.

J. C. Reif, S. Hamrit, M. Heckenberger, W. Schipprack, and H. P. Maurer, Genetic 811 structure and diversity of European flint maize populations determined with SSR 812 analyses of individuals and bulks, Theor. Appl. Genet, vol.111, pp.906-913, 2005.

, International license (which was not certified by peer review) is the author/funder

J. C. Reif, M. L. Warburton, X. C. Xia, D. A. Hoisington, and J. Crossa, Grouping of 814 accessions of Mexican races of maize revisited with SSR markers, Theor. Appl. Genet, vol.815, pp.177-185, 2006.

J. C. Reif, P. Zhang, S. Dreisigacker, M. L. Warburton, and M. Van-ginkel, Wheat 817 genetic diversity trends during domestication and breeding, Theor. Appl. Genet, vol.110, pp.818-859, 2005.

M. H. Reyes-valdés, A. Santacruz-varela, O. Martínez, J. Simpson, and C. Hayano-kanashiro, Analysis and Optimization of Bulk DNA Sampling with Binary Scoring for 821 Germplasm Characterization, PLoS ONE, vol.8, p.79936, 2013.

R. Rincent, L. Moreau, H. Monod, E. Kuhn, and A. E. Melchinger, Recovering Power 823 in Association Mapping Panels with Variable Levels of Linkage Disequilibrium, Genetics, vol.824, pp.375-387, 2014.

J. S. Rogers, Measures of genetic similarity and genetic distance, Stud. Genet, vol.7, pp.145-826, 1972.

Y. Rousselle, E. Jones, A. Charcosset, P. Moreau, and K. Robbins, Study on Essential 828 Derivation in Maize: III. Selection and Evaluation of a Panel of Single Nucleotide 829, 2015.

, Polymorphism Loci for Use in European and North American Germplasm, Crop Sci, vol.830, p.1170

C. Schlötterer, R. Tobler, R. Kofler, and V. Nolte, Sequencing pools of individuals -832 mining genome-wide polymorphism data without big funding, Nat. Rev. Genet, vol.15, pp.833-749, 2014.

A. Segovia-lerma, R. G. Cantrell, J. M. Conway, and I. M. Ray, AFLP-based assessment 835 of genetic diversity among nine alfalfa germplasms using bulk DNA templates, Genome, vol.836, pp.51-58, 2003.

P. Sham, J. S. Bader, I. Craig, M. O'donovan, and M. Owen, DNA Pooling: a tool for 838 large-scale association studies, Nat. Rev. Genet, vol.3, pp.862-871, 2002.

C. L. Simpson, A central resource for accurate allele frequency estimation from pooled 840 DNA genotyped on DNA microarrays, Nucleic Acids Res, vol.33, pp.25-25, 2005.

A. Strigens, W. Schipprack, J. C. Reif, and A. E. Melchinger, Unlocking the Genetic 842 Diversity of Maize Landraces with Doubled Haploids Opens New Avenues for 843 Breeding, PLoS ONE, vol.8, p.57234, 2013.

S. D. Tanksley, Seed Banks and Molecular Maps: Unlocking Genetic Potential from the 845 Wild, Science, vol.277, pp.1063-1066, 1997.

Y. Vigouroux, S. Mitchell, Y. Matsuoka, M. Hamblin, and S. Kresovich, An analysis 850 of genetic diversity across the maize genome using microsatellites, Genetics, vol.169, p.1630, 2005.

X. Yang, Y. Xu, T. Shah, H. Li, and Z. Han, Comparison of SSRs and SNPs in 853 assessment of genetic relatedness in maize, Genetica, vol.139, pp.1045-1054, 2011.

Q. Yao, K. Yang, G. Pan, and T. Rong, Genetic diversity of maize (Zea mays L.) 855 landraces from Southwest China based on SSR data, J. Genet. Genomics, vol.34, pp.851-860, 2007.

W. Zhao, Panzea: a database and resource for molecular and functional diversity in the 857 maize genome, Nucleic Acids Res, vol.34, pp.752-757, 2006.

, International license (which was not certified by peer review) is the author/funder