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The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads Ralf Koebnik c16e9725fe204c3ddff8ac943ff17ff3 ird.fr ralf-koebnik 753637 4844-753637 http://www.researcherid.com/rid/J-5627-2014 https://orcid.org/0000-0002-4419-0542 https://www.idref.fr/150035969 http://www.researcherid.com/rid/http://www.researcherid.com/rid/J-5627-2014 Daiva Burokiene 1874996-0 Claude Bragard 703560-0 Christine Chang 936130-0 Marion Fischer-Le Saux a93c475653bac1d830c04e6788c6166b inrae.fr marion-fischer-le-saux 183908 3843-183908 https://orcid.org/0000-0002-9567-9444 https://www.idref.fr/198034458 Roland Kölliker 1274354-0 Jillian Lang 2050763-0 Jan Leach 792991 1444101-792991 https://orcid.org/0000-0001-7252-4397 Emily Luna 1444099-0 Perrine Portier d4b04bb1c61e25b46bf7b51c5f8b0a30 inrae.fr perrine-portier 22121 190598-22121 https://orcid.org/0000-0003-1033-6731 https://www.idref.fr/084137843 Angeliki Sagia 2050764-0 Janet Ziegle 1870620-0 Stephen Philip Cohen 2050765-0 Jonathan Jacobs fe6e73dcef41b94237a9891689861ecf osu.edu 763701 2050766-763701 https://orcid.org/0000-0002-1553-2013 Olivier DUPRE 5d9a6f42ffdc2a2283eba98eba505197 inrae.fr United States Department of Agriculture National Institute of Food and Agriculture Postdoctoral Fellowship (2018-08122), for SPC; 2020-10-23 12:32:04 2026-04-10 14:18:04 2020-10-23 12:32:04 2021 0 inra_etatDocument_local_0 inra_publicVise_local_SC contributor Olivier DUPRE 5d9a6f42ffdc2a2283eba98eba505197 inrae.fr CCSD hal-02976163 https://hal.inrae.fr/hal-02976163 koebnik:hal-02976163 <i>Phytopathology</i>, 2021, 111 (4), pp.611-616. <a target="_blank" href="https://dx.doi.org/10.1094/PHYTO-07-20-0273-SC">⟨10.1094/PHYTO-07-20-0273-SC⟩</a> Phytopathology, 2021, 111 (4), pp.611-616. ⟨10.1094/PHYTO-07-20-0273-SC⟩ CIRAD - Centre de coopération internationale en recherche agronomique pour le développement Université d'Angers OpenAIRE l'unam - université nantes angers le mans Archive ouverte en agrobiosciences Biologie-AgroSciences Université de Montpellier Institut de Recherche en Horticulture et Semences Institut National de Recherche en Agriculture, Alimentation et Environnement Université de Montpellier (2015-2021) Département Santé des Plantes et Environnement (SPE) Institut Agro Plant Health Institute of Montpellier International No Yes The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads Ralf Koebnik c16e9725fe204c3ddff8ac943ff17ff3 ird.fr ralf-koebnik 753637 4844-753637 http://www.researcherid.com/rid/J-5627-2014 https://orcid.org/0000-0002-4419-0542 https://www.idref.fr/150035969 http://www.researcherid.com/rid/http://www.researcherid.com/rid/J-5627-2014 Daiva Burokiene 1874996-0 Claude Bragard 703560-0 Christine Chang 936130-0 Marion Fischer-Le Saux a93c475653bac1d830c04e6788c6166b inrae.fr marion-fischer-le-saux 183908 3843-183908 https://orcid.org/0000-0002-9567-9444 https://www.idref.fr/198034458 Roland Kölliker 1274354-0 Jillian Lang 2050763-0 Jan Leach 792991 1444101-792991 https://orcid.org/0000-0001-7252-4397 Emily Luna 1444099-0 Perrine Portier d4b04bb1c61e25b46bf7b51c5f8b0a30 inrae.fr perrine-portier 22121 190598-22121 https://orcid.org/0000-0003-1033-6731 https://www.idref.fr/084137843 Angeliki Sagia 2050764-0 Janet Ziegle 1870620-0 Stephen Philip Cohen 2050765-0 Jonathan Jacobs fe6e73dcef41b94237a9891689861ecf osu.edu 763701 2050766-763701 https://orcid.org/0000-0002-1553-2013 7803 0031-949X 0031-949X Phytopathology American Phytopathological Society 111 4 611-616 2021 2020-09-30 10.1094/PHYTO-07-20-0273-SC 32997607 000645446200002 English Type 2 secretion Effector-encoding transposon Evolution Xanthomonas theicola Tea plant Bacterial canker Type 3 secretion Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy bacterial gene tea plant Camellia sinensis Xanthomonas canker Journal articles Journal articles Journal articles

Xanthomonas theicola is the causal agent of bacterial canker on tea plants. There is no complete genome sequence available for X. theicola, a close relative of the species X. translucens and X. hyacinthi, thus limiting basic research for this group of pathogens. Here we release a highquality complete genome sequence for the X. theicola type strain, CFBP 4691T. Single-molecule real-time sequencing with a mean coverage of 264X revealed two contigs of 4,744,641 bp (chromosome) and 40,955 bp (plasmid) in size. Genome mining revealed the presence of nonribosomal peptide synthases, two CRISPR systems, the Xps type 2 secretion system, and the Hrp type 3 secretion system. Surprisingly, this strain encodes an additional type 2 secretion system and a novel type 3 secretion system with enigmatic function, hitherto undescribed for xanthomonads. Four type 3 effector genes were found on complete or partial transposons, suggesting a role of transposons in effector gene evolution and spread. This genome sequence fills an important gap to better understand the biology and evolution of the early-branching xanthomonads, also known as clade-1 xanthomonads.

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https://www.uclouvain.be/fr Pacific Biosciences [Menlo Park]

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