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Development of new SNP and INDEL loci for the valuable African timber species Lophira alata

Abstract : The timber of the speciesLophira alata(azobe) is very popular for outdoor constructions, which favours its overexploitation and illegal logging. We sampled individuals from Liberia, Ivory Coast, Ghana, Nigeria, Cameroon, Gabon, Congo Brazzaville and Republic Democratic of Congo to discover new nuclear and plastidial SNP and INDEL loci through restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. From an initial set of 397 loci, a final set of 126 loci was selected for timber tracking purposes.
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https://hal.inrae.fr/hal-03158000
Contributor : Marion Desailly <>
Submitted on : Wednesday, March 3, 2021 - 3:45:53 PM
Last modification on : Thursday, March 4, 2021 - 3:06:55 AM

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Celine Blanc-Jolivet, Malte Mader, Henri-Noël Bouda, Marie Massot, Kasso Dainou, et al.. Development of new SNP and INDEL loci for the valuable African timber species Lophira alata. Conservation Genetics Resources, Springer, 2021, 13 (1), pp.85-87. ⟨10.1007/s12686-020-01173-5⟩. ⟨hal-03158000⟩

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