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Host plants and insecticides shape the evolution of genetic and clonal diversity in a major aphid crop pest Lise Roy de4e0fa7106bdbb370334a53b72b4b02 univ-montp3.fr lise-roy 745821 477175-745821 http://www.researcherid.com/rid/G-5648-2017 https://orcid.org/0000-0001-8833-1717 https://www.idref.fr/080822118 http://www.researcherid.com/rid/http://www.researcherid.com/rid/G-5648-2017 Benoît Barrès a6ec774c380c2c1c1ce87e4272f5e45c anses.fr absent-user 784265 881074-784265 https://orcid.org/0000-0002-6777-0275 https://www.idref.fr/112469256 https://viaf.org/viaf/191824070 http://isni.org/isni/0000000357020814 Cécile Capderrey 806011b384aea56675fc910b9eb68dc9 brgm.fr cecile-capderrey 1520046 809206-1520046 https://orcid.org/0000-0003-1723-4279 Frédérique Mahéo 874581-0 Annie Micoud 5b07852f87e6ec4814c0e51401d95078 anses.fr 878437 483452-878437 Maurice Hullé 2af4775a98531837ce4c5104d2b69c40 rennes.inra.fr 1202814 885174-1202814 https://orcid.org/0000-0002-9520-3454 Jean-Christophe Simon 572ff688a40903b584da524cffc02290 inrae.fr jeanchristophesimon 745246 3014-745246 https://orcid.org/0000-0003-0620-5835 https://www.idref.fr/090947193 https://viaf.org/viaf/2177127 http://isni.org/isni/0000000053420800 Anne-Sophie Grenier 7f4d6a6a6ad17e086d72bae9731dd391 inrae.fr FranceAgrimer (projects FAM-2013-0641 and Resaphid) 2022-07-22 14:01:31 2026-04-23 18:22:02 2022-07-22 14:01:31 2022 0 inra_etatDocument_local_0 Scientists contributor Anne-Sophie Grenier 7f4d6a6a6ad17e086d72bae9731dd391 inrae.fr CCSD hal-03736450 https://hal.inrae.fr/hal-03736450 roy:hal-03736450 <i>Evolutionary Applications</i>, 2022, 15 (10), pp.1653-1669. <a target="_blank" href="https://dx.doi.org/10.1111/eva.13417">⟨10.1111/eva.13417⟩</a> Evolutionary Applications, 2022, 15 (10), pp.1653-1669. ⟨10.1111/eva.13417⟩ Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail École Pratique des Hautes Études Université de Rennes 1 CNRS - Centre national de la recherche scientifique Université de Montpellier Paul-Valéry Centre d’Ecologie Fonctionnelle et Evolutive Institut de génétique, environnement et protection des plantes UFR SVE Sciences de la vie et de l'environnement Publications labos UR1 dans HAL-Rennes 1 Université Paris sciences et lettres UR1 - publications SDV Archive ouverte en agrobiosciences Université de Montpellier TEST Université de Rennes CSS Université de Rennes TEST-DEV Institut Agro Montpellier Institut National de Recherche en Agriculture, Alimentation et Environnement INRAE Occitanie Montpellier École Pratique des Hautes Études - PSL Pôle UnivRennes - Environnement Université de Montpellier (2015-2021) Université de Montpellier - EPE collection test Réseau "Systèmes Agricoles et Eau" Département Santé des Plantes et Environnement (SPE) Institut Agro Institut écologie et environnement du CNRS International No Yes Host plants and insecticides shape the evolution of genetic and clonal diversity in a major aphid crop pest Lise Roy de4e0fa7106bdbb370334a53b72b4b02 univ-montp3.fr lise-roy 745821 477175-745821 http://www.researcherid.com/rid/G-5648-2017 https://orcid.org/0000-0001-8833-1717 https://www.idref.fr/080822118 http://www.researcherid.com/rid/http://www.researcherid.com/rid/G-5648-2017 Benoît Barrès a6ec774c380c2c1c1ce87e4272f5e45c anses.fr absent-user 784265 881074-784265 https://orcid.org/0000-0002-6777-0275 https://www.idref.fr/112469256 https://viaf.org/viaf/191824070 http://isni.org/isni/0000000357020814 Cécile Capderrey 806011b384aea56675fc910b9eb68dc9 brgm.fr cecile-capderrey 1520046 809206-1520046 https://orcid.org/0000-0003-1723-4279 Frédérique Mahéo 874581-0 Annie Micoud 5b07852f87e6ec4814c0e51401d95078 anses.fr 878437 483452-878437 Maurice Hullé 2af4775a98531837ce4c5104d2b69c40 rennes.inra.fr 1202814 885174-1202814 https://orcid.org/0000-0002-9520-3454 Jean-Christophe Simon 572ff688a40903b584da524cffc02290 inrae.fr jeanchristophesimon 745246 3014-745246 https://orcid.org/0000-0003-0620-5835 https://www.idref.fr/090947193 https://viaf.org/viaf/2177127 http://isni.org/isni/0000000053420800 104392 1752-4563 1752-4571 Evolutionary Applications Blackwell 15 10 1653–1669 2022 10.1111/eva.13417 36330297 PMC9624068 000822252500001 https://onlinelibrary.wiley.com/doi/full/10.1111/eva.13417 English temporal dynamics Myzus persicae insecticide resistance gene flow agricultural landscape Life Sciences [q-bio] agrarian landscape farm landscape agricultural landscape gene flow insecticide resistance Aphis persicae Myzus persicae Aphidoidea speciation Journal articles Journal articles Journal articles - Review article Pesticides

Understanding the spatiotemporal dynamics of pesticide resistance at the landscape scale is essential to anticipate the evolution and spread of new resistance phenotypes. In crop mosaics, host plant specialization in pest populations is likely to dampen the spread of pesticide resistance between different crops even in mobile pests such as aphids. Here, we assessed the contribution of host-based genetic differentiation to the dynamics of resistance alleles in Myzus persicae, a major aphid pest which displays several insecticide resistance mechanisms. We obtained a representative sample of aphids from a crop mosaic through a suction trap for 7 years and from various crops as a reference collection. We genotyped these aphids at 14 microsatellite markers and four insecticide-resistant loci, analyzed the genetic structure, and assigned host-based genetic groups from field-collected aphids. Four well-defined genetic clusters were found in aerial samples, three of which with strong association with host-plants. The fourth group was exclusive to aerial samples and highly divergent from the others, suggesting mixture with a closely related taxon of M. persicae associated with unsampled plants. We found a sharp differentiation between individuals from peach and herbaceous plants. Individuals from herbaceous hosts were separated into two genetic clusters, one more strongly associated with tobacco. The 4-loci resistance genotypes showed a strong association with the four genetic clusters, indicative of barriers to the spread of resistance. However, we found a small number of clones with resistant alleles on multiple host-plant species, which may spread insecticide resistance between crops. The 7-year survey revealed a rapid turn-over of aphid genotypes as well as the emergence, frequency increase and persistence of clones with resistance to several families of insecticides. This study highlights the importance of considering landscape-scale population structure to identify the risk of emergence and spread of insecticide resistance for a particular crop.

026506424 0000000121691275 200311847U https://ror.org/008rywf59 Centre d’Ecologie Fonctionnelle et Evolutive CEFE 2022-01-01 2024-12-31

Centre National de la Recherche Scientifique - 1919 route de Mende - 34293 Montpellier CEDEX 5

https://www.cefe.cnrs.fr/ 195223281U CAractérisation et Suivi des Phénomènes d'Evolution de Résistance aux pesticides CASPER 2020-01-01

183104226 201220379D https://ror.org/038kxsm48 Institut de Génétique, Environnement et Protection des Plantes IGEPP 2022-01-01

Domaine de la Motte au Vicomte BP 3532735653 Le Rheu

https://www.rennes.inra.fr/igepp 026404702 000000012196152X https://ror.org/00qhdy563 Université Paul-Valéry - Montpellier 3 UPVM 1970-11-18 2024-12-31

Université Paul Valéry Montpellier 3Route de Mende 34199 Montpellier Cedex 5

http://www.univ-montp3.fr/ 026375478 0000000121955365 https://ror.org/046b3cj80 École Pratique des Hautes Études EPHE 1868-01-01

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https://www.psl.eu/ 02636817X 0000000122597504 https://ror.org/02feahw73 Centre National de la Recherche Scientifique CNRS 1939-10-19

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https://occitanie.ird.fr/ https://ror.org/003vg9w96 Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement INRAE 2020-01-01

261038990 https://ror.org/03rnk6m14 Institut Agro Montpellier 2022-01-01

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https://www.institut-agro-montpellier.fr/ 260373249 https://ror.org/01dkyve95 Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement Institut Agro 2020-01-01

https://www.institut-agro.fr https://ror.org/051escj72 Université de Montpellier UM 2022-01-01

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http://www.umontpellier.fr/ 195223281U Laboratoire de Lyon [ANSES]

31, avenue Tony Garnier 69394 LYON Cedex 07

http://www.anses.fr/ https://ror.org/01rk35k63 Université de Lyon

92 rue Pasteur - CS 30122, 69361 Lyon Cedex 07

https://www.universite-lyon.fr/ 148269761 0000 0001 0584 7022 https://ror.org/0471kz689 Q392520 Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail ANSES 2010-07-01

14 rue Pierre et Marie Curie94701 MAISONS-ALFORT Cedex

26693823X https://ror.org/015m7wh34 Université de Rennes UR

Campus de Beaulieu, 263 avenue Général Leclerc, CS 74205, 35042 RENNES CEDEX

https://www.univ-rennes.fr/ 261039946 https://ror.org/01s3fs709 Institut Agro Rennes Angers 2022-01-01

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