Removes weak genomic positions whose interactions average is lower than the threshold.
filterWeakPositions(object, threshold = NULL)
object | |
---|---|
threshold | The minimum average interaction for a position to be kept. If a position's
average interaction with the entire chromosome is lower than this value in
any of the replicates, it is removed from all replicates and conditions.
Defaults to |
A filtered HiCDOCDataSet
.
Detects weak genomic positions in each replicate, and removes them from all
replicates to guarantee comparability across conditions when calling
detectCompartments
.
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