All functions |
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A/B compartment detection and differential analysis |
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Default pipeline to run on the HiCDOC analysis. |
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Methods to access a |
Access the parameters of a |
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A and B compartments detection and differences across conditions. |
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Example HiCDOCDataSet. |
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Example HiCDOCDataSet, filtered and normalized. |
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Filter small chromosomes. |
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Filter sparse replicates. |
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Filter weak positions. |
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Normalize biological biases. |
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Normalize distance effect. |
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Normalize technical biases. |
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Plot centroids. |
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Plot compartment changes. |
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Plot A/B compartments. |
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Plot the distribution of concordance differences. |
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Plot concordances. |
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Plot the distance effect. |
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Plot interaction matrices. |
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Plot boxplots of self interaction ratios. |
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Reduce a |