Plots the predicted compartments, along with their concordance in each replicate, and significant changes between experiment conditions.
plotCompartmentChanges( object, chromosome, threshold = 0.05, xlim = NULL, points = FALSE )
object | |
---|---|
chromosome | A chromosome name or index in |
threshold | Significance threshold for the compartment changes. Defaults to 0.05. |
xlim | A vector of the minimum and maximum positions to display. If NULL, displays all positions. Defaults to NULL. |
points | Whether or not to add points to the concordances. Defaults to FALSE. |
A ggplot
.
data(exampleHiCDOCDataSetProcessed) plotCompartmentChanges(exampleHiCDOCDataSetProcessed, chromosome = 1)