Constructs a HiCDOCDataSet from a set of .hic files.

HiCDOCDataSetFromHiC(paths, replicates, conditions, binSize)

Arguments

paths

A vector of paths to .hic files.

replicates

A vector of replicate names repeated along the conditions.

conditions

A vector of condition names repeated along the replicates.

binSize

The resolution (span of each position in number of bases) to select within the .hic files.

Value

A HiCDOCDataSet.

Examples

if (FALSE) { #' # Path to each file paths = c( 'path/to/condition-1.replicate-1.hic', 'path/to/condition-1.replicate-2.hic', 'path/to/condition-2.replicate-1.hic', 'path/to/condition-2.replicate-2.hic', 'path/to/condition-3.replicate-1.hic' ) # Replicate and condition of each file. Can be names instead of numbers. replicates <- c(1, 2, 1, 2, 1) conditions <- c(1, 1, 2, 2, 3) # Resolution to select binSize <- 500000 # Instantiation of data set hic.experiment <- HiCDOCDataSetFromHiC( paths, replicates = replicates, conditions = conditions, binSize = binSize ) }