Plots the boxplots of self interaction ratios, which are the differences between self interaction and median of other interactions for each genomic position. Since the A compartment is open with more interactions overall, it is assumed that self interaction ratios in compartment A are smaller than in compartment B.

plotSelfInteractionRatios(object, chromosome)

Arguments

object

A HiCDOCDataSet.

chromosome

A chromosome name or index in chromosomes(object).

Value

A ggplot.

Examples

data(exampleHiCDOCDataSetProcessed) plotSelfInteractionRatios(exampleHiCDOCDataSetProcessed, chromosome = 1)