Constructs a HiCDOCDataSet
from a set of HiC-Pro generated
files.
HiCDOCDataSetFromHiCPro(matrixPaths, bedPaths, replicates, conditions)
matrixPaths | A vector of paths to HiC-Pro matrix files. |
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bedPaths | A vector of paths to HiC-Pro bed files. |
replicates | A vector of replicate names repeated along the conditions. |
conditions | A vector of condition names repeated along the replicates. |
if (FALSE) { # Path to each matrix file matrixPaths = c( 'path/to/condition-1.replicate-1.matrix', 'path/to/condition-1.replicate-2.matrix', 'path/to/condition-2.replicate-1.matrix', 'path/to/condition-2.replicate-2.matrix', 'path/to/condition-3.replicate-1.matrix' ) # Path to each bed file bedPaths = c( 'path/to/condition-1.replicate-1.bed', 'path/to/condition-1.replicate-2.bed', 'path/to/condition-2.replicate-1.bed', 'path/to/condition-2.replicate-2.bed', 'path/to/condition-3.replicate-1.bed' ) # Replicate and condition of each file. Can be names instead of numbers. replicates <- c(1, 2, 1, 2, 1) conditions <- c(1, 1, 2, 2, 3) # Instantiation of data set hic.experiment <- HiCDOCDataSetFromHiCPro( matrixPaths = matrixPaths, bedPaths = bedPaths, replicates = replicates, conditions = conditions ) }