R/plotSelfInteractionRatios.R
plotSelfInteractionRatios.Rd
Plots the boxplots of self interaction ratios, which are the differences between self interaction and median of other interactions for each genomic position. Since the A compartment is open with more interactions overall, it is assumed that self interaction ratios in compartment A are smaller than in compartment B.
plotSelfInteractionRatios(object, chromosome)
object | |
---|---|
chromosome | A chromosome name or index in |
A ggplot
.
data(exampleHiCDOCDataSetProcessed) plotSelfInteractionRatios(exampleHiCDOCDataSetProcessed, chromosome = 1)