<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-04351595</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-04-27T03:54:57+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles</title>
            <author role="aut">
              <persName>
                <forename type="first">Alizarine</forename>
                <surname>Lorenzi</surname>
              </persName>
              <idno type="halauthorid">2905104-0</idno>
              <affiliation ref="#struct-1002313"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Cyril</forename>
                <surname>Bauland</surname>
              </persName>
              <email type="md5">2482fd5e481040e97a5a69a08e0ddf4a</email>
              <email type="domain">inrae.fr</email>
              <ptr type="url" target="https://moulon.inrae.fr/personnes/cbauland/"/>
              <idno type="idhal" notation="string">cyril-bauland</idno>
              <idno type="idhal" notation="numeric">1203505</idno>
              <idno type="halauthorid" notation="string">752973-1203505</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-9916-2744</idno>
              <idno type="GOOGLE SCHOLAR">uAev2KQAAAAJ</idno>
              <idno type="IDREF">https://www.idref.fr/27886774X</idno>
              <affiliation ref="#struct-1002313"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Sophie</forename>
                <surname>Pin</surname>
              </persName>
              <idno type="halauthorid">1126691-0</idno>
              <affiliation ref="#struct-1002313"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Delphine</forename>
                <surname>Madur</surname>
              </persName>
              <idno type="halauthorid">746476-0</idno>
              <affiliation ref="#struct-1002313"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Valérie</forename>
                <surname>Combes</surname>
              </persName>
              <idno type="halauthorid">1905801-0</idno>
              <affiliation ref="#struct-1002313"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Carine</forename>
                <surname>Palaffre</surname>
              </persName>
              <email type="md5">d2a64adfd3a0602c11249044b67453e1</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="numeric">1145572</idno>
              <idno type="halauthorid" notation="string">1188308-1145572</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-8427-1726</idno>
              <affiliation ref="#struct-1001997"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Colin</forename>
                <surname>Guillaume</surname>
              </persName>
              <idno type="halauthorid">2537058-0</idno>
              <affiliation ref="#struct-484117"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Gaëtan</forename>
                <surname>Touzy</surname>
              </persName>
              <idno type="halauthorid">2398457-0</idno>
              <affiliation ref="#struct-1060597"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Tristan</forename>
                <surname>Mary-Huard</surname>
              </persName>
              <email type="md5">fdd646bc37bf70f7888a088f07c50921</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">tristanmary-huard</idno>
              <idno type="idhal" notation="numeric">748716</idno>
              <idno type="halauthorid" notation="string">35572-748716</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-3839-9067</idno>
              <idno type="IDREF">https://www.idref.fr/22754093X</idno>
              <affiliation ref="#struct-1002311"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Alain</forename>
                <surname>Charcosset</surname>
              </persName>
              <email type="md5">3e4d7f5da6edd45538a20a2d939a232b</email>
              <email type="domain">moulon.inra.fr</email>
              <idno type="idhal" notation="string">alain-charcosset</idno>
              <idno type="idhal" notation="numeric">958141</idno>
              <idno type="halauthorid" notation="string">494356-958141</idno>
              <idno type="ORCID">https://orcid.org/0000-0001-6125-503X</idno>
              <idno type="IDREF">https://www.idref.fr/120256932</idno>
              <idno type="VIAF">https://viaf.org/viaf/220292712</idno>
              <idno type="ISNI">http://isni.org/isni/0000000139686001</idno>
              <affiliation ref="#struct-1002313"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Laurence</forename>
                <surname>Moreau</surname>
              </persName>
              <email type="md5">e9c245050a3acc2d106a7990abfb8965</email>
              <email type="domain">inrae.fr</email>
              <idno type="idhal" notation="string">laurence-moreau</idno>
              <idno type="idhal" notation="numeric">748952</idno>
              <idno type="halauthorid" notation="string">54726-748952</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-7195-1327</idno>
              <idno type="IDREF">https://www.idref.fr/180494570</idno>
              <idno type="VIAF">https://viaf.org/viaf/313567506</idno>
              <affiliation ref="#struct-1002313"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>laurence</forename>
                <surname>moreau</surname>
              </persName>
              <email type="md5">e9c245050a3acc2d106a7990abfb8965</email>
              <email type="domain">inrae.fr</email>
            </editor>
            <funder ref="#projanr-50259"/>
            <funder>Promaïs SAMMCR</funder>
            <funder>ANRT contract n°660 2020/0032</funder>
            <funder>RAGT 2n</funder>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2023-12-18 18:07:45</date>
              <date type="whenModified">2025-05-14 03:24:01</date>
              <date type="whenReleased">2023-12-18 18:07:45</date>
              <date type="whenProduced">2023-12-18</date>
              <ref type="externalLink" target="https://www.ncbi.nlm.nih.gov/pmc/articles/11341662"/>
              <fs>
                <f name="inra_publicVise_local" notation="string" n="SC">
                  <string>inra_publicVise_local_SC</string>
                </f>
              </fs>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="1078105">
                <persName>
                  <forename>laurence</forename>
                  <surname>moreau</surname>
                </persName>
                <email type="md5">e9c245050a3acc2d106a7990abfb8965</email>
                <email type="domain">inrae.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-04351595</idno>
            <idno type="halUri">https://hal.inrae.fr/hal-04351595</idno>
            <idno type="halBibtex">lorenzi:hal-04351595</idno>
            <idno type="halRefHtml">2023</idno>
            <idno type="halRef">2023</idno>
            <availability status="restricted"/>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="AGROPARISTECH">AgroParisTech</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="MIA-PARIS">MIA-Paris</idno>
            <idno type="stamp" n="GQE" corresp="AGROPARISTECH">Génétique Quantitative et Evolution - Le Moulon</idno>
            <idno type="stamp" n="UNIV-PARIS-SACLAY">Université Paris-Saclay</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="UNIVERSITE-PARIS-SACLAY" corresp="UNIV-PARIS-SACLAY">Université Paris-Saclay</idno>
            <idno type="stamp" n="ANR">ANR</idno>
            <idno type="stamp" n="GS-MATHEMATIQUES">Graduate School Mathématiques</idno>
            <idno type="stamp" n="GS-COMPUTER-SCIENCE">Graduate School Computer Science</idno>
            <idno type="stamp" n="GS-BIOSPHERA">Graduate School Biologie, Société, Ecologie &amp; Environnement, Ressources, Agriculture &amp; Alimentation</idno>
            <idno type="stamp" n="GS-LIFE-SCIENCES-HEALTH" corresp="UNIVERSITE-PARIS-SACLAY">Graduate School Life Sciences and Health</idno>
            <idno type="stamp" n="MATHNUM">Département MathNum</idno>
            <idno type="stamp" n="RESEAU-EAU">Réseau "Systèmes Agricoles et Eau"</idno>
            <idno type="stamp" n="BIOLOGIE_ET_AMELIORATION_DES_PLANTES">Département BAP INRAE</idno>
            <idno type="stamp" n="TEST-MATHNUM">Test MathNum</idno>
            <idno type="stamp" n="APT_TEST">APT_TEST</idno>
          </seriesStmt>
          <notesStmt/>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Alizarine</forename>
                    <surname>Lorenzi</surname>
                  </persName>
                  <idno type="halauthorid">2905104-0</idno>
                  <affiliation ref="#struct-1002313"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Cyril</forename>
                    <surname>Bauland</surname>
                  </persName>
                  <email type="md5">2482fd5e481040e97a5a69a08e0ddf4a</email>
                  <email type="domain">inrae.fr</email>
                  <ptr type="url" target="https://moulon.inrae.fr/personnes/cbauland/"/>
                  <idno type="idhal" notation="string">cyril-bauland</idno>
                  <idno type="idhal" notation="numeric">1203505</idno>
                  <idno type="halauthorid" notation="string">752973-1203505</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-9916-2744</idno>
                  <idno type="GOOGLE SCHOLAR">uAev2KQAAAAJ</idno>
                  <idno type="IDREF">https://www.idref.fr/27886774X</idno>
                  <affiliation ref="#struct-1002313"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Sophie</forename>
                    <surname>Pin</surname>
                  </persName>
                  <idno type="halauthorid">1126691-0</idno>
                  <affiliation ref="#struct-1002313"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Delphine</forename>
                    <surname>Madur</surname>
                  </persName>
                  <idno type="halauthorid">746476-0</idno>
                  <affiliation ref="#struct-1002313"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Valérie</forename>
                    <surname>Combes</surname>
                  </persName>
                  <idno type="halauthorid">1905801-0</idno>
                  <affiliation ref="#struct-1002313"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Carine</forename>
                    <surname>Palaffre</surname>
                  </persName>
                  <email type="md5">d2a64adfd3a0602c11249044b67453e1</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="numeric">1145572</idno>
                  <idno type="halauthorid" notation="string">1188308-1145572</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-8427-1726</idno>
                  <affiliation ref="#struct-1001997"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Colin</forename>
                    <surname>Guillaume</surname>
                  </persName>
                  <idno type="halauthorid">2537058-0</idno>
                  <affiliation ref="#struct-484117"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Gaëtan</forename>
                    <surname>Touzy</surname>
                  </persName>
                  <idno type="halauthorid">2398457-0</idno>
                  <affiliation ref="#struct-1060597"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Tristan</forename>
                    <surname>Mary-Huard</surname>
                  </persName>
                  <email type="md5">fdd646bc37bf70f7888a088f07c50921</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">tristanmary-huard</idno>
                  <idno type="idhal" notation="numeric">748716</idno>
                  <idno type="halauthorid" notation="string">35572-748716</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-3839-9067</idno>
                  <idno type="IDREF">https://www.idref.fr/22754093X</idno>
                  <affiliation ref="#struct-1002311"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Alain</forename>
                    <surname>Charcosset</surname>
                  </persName>
                  <email type="md5">3e4d7f5da6edd45538a20a2d939a232b</email>
                  <email type="domain">moulon.inra.fr</email>
                  <idno type="idhal" notation="string">alain-charcosset</idno>
                  <idno type="idhal" notation="numeric">958141</idno>
                  <idno type="halauthorid" notation="string">494356-958141</idno>
                  <idno type="ORCID">https://orcid.org/0000-0001-6125-503X</idno>
                  <idno type="IDREF">https://www.idref.fr/120256932</idno>
                  <idno type="VIAF">https://viaf.org/viaf/220292712</idno>
                  <idno type="ISNI">http://isni.org/isni/0000000139686001</idno>
                  <affiliation ref="#struct-1002313"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Laurence</forename>
                    <surname>Moreau</surname>
                  </persName>
                  <email type="md5">e9c245050a3acc2d106a7990abfb8965</email>
                  <email type="domain">inrae.fr</email>
                  <idno type="idhal" notation="string">laurence-moreau</idno>
                  <idno type="idhal" notation="numeric">748952</idno>
                  <idno type="halauthorid" notation="string">54726-748952</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-7195-1327</idno>
                  <idno type="IDREF">https://www.idref.fr/180494570</idno>
                  <idno type="VIAF">https://viaf.org/viaf/313567506</idno>
                  <affiliation ref="#struct-1002313"/>
                </author>
              </analytic>
              <monogr>
                <imprint>
                  <date type="datePub">2023-09-06</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1007/s00122-024-04566-4</idno>
              <idno type="wos">001176945600002</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <keywords scheme="author">
                <term xml:lang="en">Hybrid breeding</term>
                <term xml:lang="en">Genomic selection</term>
                <term xml:lang="en">Factorial design</term>
                <term xml:lang="en">Training set optimization</term>
                <term xml:lang="en">Inter-generation genomic prediction</term>
              </keywords>
              <classCode scheme="halDomain" n="sdv">Life Sciences [q-bio]</classCode>
              <classCode scheme="halTypology" n="UNDEFINED">Preprints, Working Papers, ...</classCode>
              <classCode scheme="halOldTypology" n="UNDEFINED">Preprints, Working Papers, ...</classCode>
              <classCode scheme="halTreeTypology" n="UNDEFINED">Preprints, Working Papers, ...</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>&lt;p&gt;Genomic selection offers new prospects for revisiting hybrid breeding schemes by replacing extensive phenotyping of individuals with genomic predictions. Finding the ideal design for training genomic prediction models is still an open question. Previous studies have shown promising predictive abilities using sparse factorial instead of tester-based training sets to predict single-cross hybrids from the same generation. This study aims to further investigate the use of factorials and their optimization to predict line general combining abilities (GCAs) and hybrid values across breeding cycles. It relies on two breeding cycles of a maize reciprocal genomic selection scheme involving multiparental connected reciprocal populations from flint and dent complementary heterotic groups selected for silage performances. Selection based on genomic predictions trained on a factorial design resulted in a significant genetic gain for dry matter yield in the new generation. Results confirmed the efficiency of sparse factorial training sets to predict candidate line GCAs and hybrid values across breeding cycles. Compared to a previous study based on the first generation, the advantage of factorial over tester training sets appeared lower across generations. Updating factorial training sets by adding single-cross hybrids between selected lines from the previous generation or a random subset of hybrids from the new generation both improved predictive abilities. The CDmean criterion helped determine the set of single-crosses to phenotype to update the training set efficiently. Our results validated the efficiency of sparse factorial designs for calibrating hybrid genomic prediction experimentally and showed the benefit of updating it along generations.&lt;/p&gt;</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-1002313" status="VALID">
          <idno type="RNSR">198017849T</idno>
          <idno type="ROR">https://ror.org/012fqzm33</idno>
          <orgName>Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale)</orgName>
          <orgName type="acronym">GQE-Le Moulon</orgName>
          <date type="start">2020-01-01</date>
          <desc>
            <address>
              <addrLine>UMR de Génétique Quantitative et Evolution - Le Moulon,   Ferme du Moulon F-91190 GIF SUR YVETTE</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://moulon.inrae.fr/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-148117" type="direct"/>
            <relation active="#struct-419361" type="direct"/>
            <relation name="UMR8120" active="#struct-441569" type="direct"/>
            <relation name="UMR0320" active="#struct-577435" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-1001997" status="VALID">
          <idno type="RNSR">196117762F</idno>
          <orgName>Unité expérimentale du maïs</orgName>
          <orgName type="acronym">BORDX ST-MARTIN UE</orgName>
          <date type="start">2020-01-01</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation name="UE0394" active="#struct-577435" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-484117" status="INCOMING">
          <orgName>Maïsadour Semences</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
        </org>
        <org type="regrouplaboratory" xml:id="struct-1060597" status="VALID">
          <orgName>RAGT 2N</orgName>
          <desc>
            <address>
              <addrLine>2n, Route d'Epincy, 28150 Louville la Chenard</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-1076824" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-1002311" status="VALID">
          <idno type="RNSR">201119642G</idno>
          <idno type="ROR">https://ror.org/00780az30</idno>
          <orgName>Mathématiques et Informatique Appliquées</orgName>
          <orgName type="acronym">MIA Paris-Saclay</orgName>
          <date type="start">2020-01-01</date>
          <desc>
            <address>
              <addrLine>22 place de l'Agronomie CS 20040 91123 Palaiseau cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://mia-ps.inrae.fr/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-148117" type="direct"/>
            <relation active="#struct-419361" type="direct"/>
            <relation name="UMR0518" active="#struct-577435" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-148117" status="VALID">
          <idno type="IdRef">139408088</idno>
          <idno type="ROR">https://ror.org/02kbmgc12</idno>
          <orgName>AgroParisTech</orgName>
          <date type="start">2007-01-01</date>
          <desc>
            <address>
              <addrLine>22 place de l'Agronomie CS 20040 91123 Palaiseau cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.agroparistech.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-419361" status="VALID">
          <idno type="IdRef">241345251</idno>
          <idno type="ROR">https://ror.org/03xjwb503</idno>
          <orgName>Université Paris-Saclay</orgName>
          <desc>
            <address>
              <addrLine>Bâtiment Bréguet, 3 Rue Joliot Curie 2e ét, 91190 Gif-sur-Yvette</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.universite-paris-saclay.fr/fr</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-577435" status="VALID">
          <idno type="ROR">https://ror.org/003vg9w96</idno>
          <orgName>Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement</orgName>
          <orgName type="acronym">INRAE</orgName>
          <date type="start">2020-01-01</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
        </org>
        <org type="institution" xml:id="struct-1076824" status="VALID">
          <orgName>RAGT</orgName>
          <desc>
            <address>
              <addrLine>Centre de recherche de Druelle12510 Olemps</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.ragt.fr/</ref>
          </desc>
        </org>
      </listOrg>
      <listOrg type="projects">
        <org type="anrProject" xml:id="projanr-50259" status="VALID">
          <idno type="anr">ANR-17-EURE-0003</idno>
          <orgName>CBH-EUR-GS</orgName>
          <desc>CBH-EUR-GS</desc>
          <date type="start">2017</date>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>