First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices
Mathilde Dugenne
(1)
,
Marco Corrales-Ugalde
(2)
,
Jessica Luo
(3)
,
Rainer Kiko
(1)
,
Todd O'Brien
(4)
,
Jean-Olivier Irisson
(1)
,
Fabien Lombard
(1)
,
Lars Stemmann
(1)
,
Charles Stock
(3)
,
Clarissa Anderson
(5)
,
Marcel Babin
(6, 7)
,
Nagib Bhairy
(8)
,
Sophie Bonnet
(8)
,
Francois Carlotti
(8)
,
Astrid Cornils
(9)
,
E. Taylor Crockford
(10)
,
Patrick Daniel
(11)
,
Corinne Desnos
(12)
,
Laetitia Drago
(1)
,
Amanda Elineau
(12)
,
Alexis Fischer
(11)
,
Nina Grandrémy
(13)
,
Pierre-Luc Grondin
(6, 7)
,
Lionel Guidi
(1)
,
Cécile Guieu
(1)
,
Helena Hauss
(14, 15)
,
Kendra Hayashi
(11)
,
Jenny Huggett
(16)
,
Laetitia Jalabert
(12)
,
Lee Karp-Boss
(17)
,
Kasia Kenitz
(5)
,
Raphael Kudela
(11)
,
Magali Lescot
(8)
,
Claudie Marec
(18, 19, 7)
,
Andrew Mcdonnell
(20)
,
Zoe Mériguet
(1)
,
Barbara Niehoff
(9)
,
Margaux Noyon
(21)
,
Thelma Panaïotis
(1)
,
Emily Peacock
(10)
,
Marc Picheral
(1)
,
Emilie Riquier
(12)
,
Collin Roesler
(22)
,
Jean-Baptiste Romagnan
(13)
,
Heidi Sosik
(10)
,
Gretchen Spencer
(17)
,
Jan Taucher
(14)
,
Chloé Tilliette
(1)
,
Marion Vilain
(1)
1
LOV -
Laboratoire d'océanographie de Villefranche
2 AOS Program - Atmospheric and Oceanic Sciences Program [Princeton]
3 GFDL - NOAA Geophysical Fluid Dynamics Laboratory
4 NMFS - NOAA National Marine Fisheries Service
5 SIO - UC San Diego - Scripps Institution of Oceanography
6 Takuvik International Research Laboratory
7 ULaval - Université Laval [Québec]
8 MIO - Institut méditerranéen d'océanologie
9 AWI - Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung = Alfred Wegener Institute for Polar and Marine Research = Institut Alfred-Wegener pour la recherche polaire et marine
10 WHOI - Woods Hole Oceanographic Institution
11 UC Santa Cruz - University of California [Santa Cruz]
12 IMEV - Institut de la Mer de Villefranche
13 DECOD - Dynamique et durabilité des écosystèmes : de la source à l’océan
14 GEOMAR - Helmholtz Centre for Ocean Research [Kiel]
15 NORCE - Norwegian Research Center
16 University of Cape Town
17 University of Maine
18 Takuvik Joint International Laboratory ULAVAL-CNRS
19 IUEM - Institut Universitaire Européen de la Mer
20 UAF - University of Alaska [Fairbanks]
21 Department of Oceanography [Cape Town]
22 Bowdoin College [Brunswick]
2 AOS Program - Atmospheric and Oceanic Sciences Program [Princeton]
3 GFDL - NOAA Geophysical Fluid Dynamics Laboratory
4 NMFS - NOAA National Marine Fisheries Service
5 SIO - UC San Diego - Scripps Institution of Oceanography
6 Takuvik International Research Laboratory
7 ULaval - Université Laval [Québec]
8 MIO - Institut méditerranéen d'océanologie
9 AWI - Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung = Alfred Wegener Institute for Polar and Marine Research = Institut Alfred-Wegener pour la recherche polaire et marine
10 WHOI - Woods Hole Oceanographic Institution
11 UC Santa Cruz - University of California [Santa Cruz]
12 IMEV - Institut de la Mer de Villefranche
13 DECOD - Dynamique et durabilité des écosystèmes : de la source à l’océan
14 GEOMAR - Helmholtz Centre for Ocean Research [Kiel]
15 NORCE - Norwegian Research Center
16 University of Cape Town
17 University of Maine
18 Takuvik Joint International Laboratory ULAVAL-CNRS
19 IUEM - Institut Universitaire Européen de la Mer
20 UAF - University of Alaska [Fairbanks]
21 Department of Oceanography [Cape Town]
22 Bowdoin College [Brunswick]
Mathilde Dugenne
- Fonction : Auteur
- PersonId : 827812
- ORCID : 0000-0002-9316-1473
Marco Corrales-Ugalde
- Fonction : Auteur
- PersonId : 1401843
- ORCID : 0000-0001-5387-4914
Jessica Luo
- Fonction : Auteur
- PersonId : 1401844
- ORCID : 0000-0002-0032-9370
Rainer Kiko
- Fonction : Auteur
- PersonId : 1149536
- IdHAL : rainer-kiko
- ORCID : 0000-0002-7851-9107
Jean-Olivier Irisson
- Fonction : Auteur
- PersonId : 176333
- IdHAL : joirisson
- ORCID : 0000-0003-4920-3880
- IdRef : 174736940
Fabien Lombard
- Fonction : Auteur
- PersonId : 8141
- IdHAL : fabien-lombard
- ORCID : 0000-0002-8626-8782
- IdRef : 108028747
Lars Stemmann
- Fonction : Auteur
- PersonId : 762924
- IdHAL : lars-stemmann
- ORCID : 0000-0001-8935-4531
- IdRef : 157238024
Patrick Daniel
- Fonction : Auteur
- PersonId : 1401846
- ORCID : 0000-0003-0328-3192
Laetitia Drago
- Fonction : Auteur
- PersonId : 1401847
- ORCID : 0000-0002-0054-1734
Alexis Fischer
- Fonction : Auteur
- PersonId : 1401848
- ORCID : 0000-0002-8028-487X
Nina Grandrémy
- Fonction : Auteur
- PersonId : 1283165
- ORCID : 0000-0002-0797-1331
Pierre-Luc Grondin
- Fonction : Auteur
- PersonId : 1282886
- ORCID : 0000-0002-5060-6647
Lionel Guidi
- Fonction : Auteur
- PersonId : 178319
- IdHAL : lionel-guidi
- ORCID : 0000-0002-6669-5744
- IdRef : 129258148
Cécile Guieu
- Fonction : Auteur
- PersonId : 734634
- IdHAL : cecile-guieu
- ORCID : 0000-0001-6373-8326
- IdRef : 101283415
Helena Hauss
- Fonction : Auteur
- PersonId : 775514
- ORCID : 0000-0002-0754-3388
Jenny Huggett
- Fonction : Auteur
- PersonId : 1401849
- ORCID : 0000-0001-9315-8672
Raphael Kudela
- Fonction : Auteur
- PersonId : 1298439
- ORCID : 0000-0002-8640-1205
Magali Lescot
- Fonction : Auteur
- PersonId : 20303
- IdHAL : magali-lescot
- ORCID : 0000-0001-8189-0823
Claudie Marec
- Fonction : Auteur
- PersonId : 775567
- ORCID : 0000-0001-6835-1921
Jean-Baptiste Romagnan
- Fonction : Auteur
- PersonId : 972679
Heidi Sosik
- Fonction : Auteur
- PersonId : 804591
- ORCID : 0000-0002-4591-2842
Résumé
Abstract. In marine ecosystems, most physiological, ecological, or physical processes are size dependent. These include metabolic rates, the uptake of carbon and other nutrients, swimming and sinking velocities, and trophic interactions, which eventually determine the stocks of commercial species, as well as biogeochemical cycles and carbon sequestration. As such, broad-scale observations of plankton size distribution are important indicators of the general functioning and state of pelagic ecosystems under anthropogenic pressures. Here, we present the first global datasets of the Pelagic Size Structure database (PSSdb), generated from plankton imaging devices. This release includes the bulk particle normalized biovolume size spectrum (NBSS) and the bulk particle size distribution (PSD), along with their related parameters (slope, intercept, and R2) measured within the epipelagic layer (0–200 m) by three imaging sensors: the Imaging FlowCytobot (IFCB), the Underwater Vision Profiler (UVP), and benchtop scanners. Collectively, these instruments effectively image organisms and detrital material in the 7–10 000 µm size range. A total of 92 472 IFCB samples, 3068 UVP profiles, and 2411 scans passed our quality control and were standardized to produce consistent instrument-specific size spectra averaged to 1° × 1° latitude and longitude and by year and month. Our instrument-specific datasets span most major ocean basins, except for the IFCB datasets we have ingested, which were exclusively collected in northern latitudes, and cover decadal time periods (2013–2022 for IFCB, 2008–2021 for UVP, and 1996–2022 for scanners), allowing for a further assessment of the pelagic size spectrum in space and time. The datasets that constitute PSSdb's first release are available at https://doi.org/10.5281/zenodo.11050013 (Dugenne et al., 2024b). In addition, future updates to these data products can be accessed at https://doi.org/10.5281/zenodo.7998799.
Domaines
Météorologie| Origine | Fichiers éditeurs autorisés sur une archive ouverte |
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