Turbulence in canopy plays a crucial role in biosphere-atmosphere exchanges. Traditionally, canopy turbulence has been analyzed under stationary conditions based on atmospheric thermal stability, disregarding the time of the day and the atmospheric boundary layer (ABL) depth, although recent studies have suggested that daytime canopy turbulence might be influenced by ABL-scale motions. The morning transition offers an intriguing period when the ABL grows and when an increasing influence of large-scale motions on canopy turbulence might be anticipated. Using large-eddy simulations resolving both canopy and ABL turbulence, we investigate here how the turbulence and exchanges at canopy top change along the morning transition according to the wind intensity. Under significant wind, simulations show that canopy turbulence and exchanges are dominated by mixing-layer-type motions whose characteristics remain constant during the morning transition, even though ABL-scale motions imprint on the canopy’s instantaneous velocity fields as the ABL grows. Under low wind, the canopy turbulence is dominated by plumes, whose horizontal sizes extend with the ABL, while their vertical sizes reach a limit before the morning transition ends. In the early morning, canopy-top exchanges are influenced by sources from both the canopy top and the ABL entrainment zone, explaining some of the dissimilarity in turbulent transport between scalars, apart from the differences in the location of canopy scalar sources. When reaching the residual layer, the ABL grows quicker, with intense water vapour and carbon dioxide exchanges, dominated by large-scale motions penetrating deep within the canopy, releasing into the atmosphere the nocturnal accumulated carbon dioxide.