Bootstrap: docker
From: continuumio/miniconda3
IncludeCmd: yes

%files
env/metagWGS.yml /

%post
apt-get update && apt-get install -y procps && apt-get clean -y
/opt/conda/bin/conda env create -f /metagWGS.yml && /opt/conda/bin/conda clean -a

%environment
export PATH=/opt/conda/envs/metagWGS/bin:$PATH

%runscript
     "$@"