AskoR, an R package for easy RNA-Seq data analysis illustrated by the analysis of plant/pathogen/microbiote interactions. - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Conference Poster Year : 2022

AskoR, an R package for easy RNA-Seq data analysis illustrated by the analysis of plant/pathogen/microbiote interactions.

Abstract

AskoR, an R package for easy RNA-seq data analysis illustrated by the analysis of plant/pathogen/microbiote interactions 1 -R tool -Flexible: a large set of parameters for experimented users and default values for novices -Including edgeR 2 , topGO 3 and coseq 4,5 packages for differential expression analyses, GO-term enrichments, and co-expression clusters identification -Ouputs compatible with AskOmics 6 tool for integration of heterogeneous data -https://github.com/askomics/askoR AskoR

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Dates and versions

hal-04720279 , version 1 (04-10-2024)

Identifiers

  • HAL Id : hal-04720279 , version 1

Cite

Susete Alves Carvalho, Kévin Gazengel, Masanelli Sylvin, Anthony Bretaudeau, Stéphanie Robin, et al.. AskoR, an R package for easy RNA-Seq data analysis illustrated by the analysis of plant/pathogen/microbiote interactions.. Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jul 2022, Rennes, France. ⟨hal-04720279⟩
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