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            <funder>We acknowledge the sequencing and bioinformatics expertize of the I2BC high-throughput sequencing facility, supported by France Génomique (funded by the French government’s Programme Investissements d’Avenir (PIA): ANR-10-INBS-0009). We acknowledge the cryo-ET expertize and assistance of the Institut Pasteur NanoImaging Core facility, created and supported by a PIA grant (EquipEx CACSICE: ANR-11-EQPX-0008). We thank the members of the EpiMic team for helpful discussions, and Simonetta Gribaldo, Delphine Lechardeur, Philippe Noirot and Pascale Cossart, for critical feedback to this manuscript. This work was supported by grants from the Agence Nationale de la Recherche (ANR) to H.B. (PERMALI: ANR-20-CE35-0001-01) and A.P. (THOR: ANR-20-CE15-0008-01); from the Université Paris-Saclay to H.B. (DEPISTALIS, AAP Poc in labs 2019); from INRAE’s MICA department and Micalis Institute to A.P.(AAP Micalis 2023); and from the European Research Council, under the Horizon 2020 research and innovation program, to R.C.L. (agreement ID:772178). F.C. was supported by postdoctoral grants from INRAE MICA department. A.B. was supported by the EU Horizon 2020 research and innovation program, under the Marie Skłodowska-Curie Actions grant (agreement ID: 101030628). This work was supported by grants from the Université Paris-Saclay to H.B. (DEPISTALIS, AAP Poc in labs 2019); from INRAE’s MICA department and Micalis Institute to A.P. (AAP Micalis 2023). F.C. was supported by postdoctoral grants from INRAE MICA department. A.B. was supported by the EU Horizon 2020 research and innovation program, under the Marie Skłodowska-Curie Actions grant (agreement ID: 101030628).</funder>
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