A. Okubo, Diffusion and ecological problems: mathematical models, 1980.

R. Forman and M. Godron, An Ecology of the Landscape, BioScience, vol.33, issue.9, 1986.
DOI : 10.1093/bioscience/33.9.535

M. Turner and R. Gardner, Quantitative methods in landscape ecology, 1991.
DOI : 10.1007/978-1-4757-4244-2

C. Gaucherel, N. Giboire, V. Viaud, T. Houet, and J. Baudry, A domain-specific language for patchy landscape modelling: The Brittany agricultural mosaic as a case study, Ecological Modelling, vol.194, issue.1-3, pp.233-243, 2006.
DOI : 10.1016/j.ecolmodel.2005.10.026
URL : https://hal.archives-ouvertes.fr/hal-00023307

C. Gaucherel, S. Griffon, L. Misson, and T. Houet, Combining process-based models for future biomass assessment at landscape scale, Landscape Ecology, vol.30, issue.2, p.300, 2010.
DOI : 10.1007/s10980-009-9400-6
URL : https://hal.archives-ouvertes.fr/hal-00424093

R. Costanza and A. Voinov, Landscape simulation modeling. A spatially explicit, dynamic approach, 2004.

N. Kotliar and J. Wiens, Multiple Scales of Patchiness and Patch Structure: A Hierarchical Framework for the Study of Heterogeneity, Oikos, vol.59, issue.2, pp.523-560, 1990.
DOI : 10.2307/3545542

C. Gaucherel and T. Houet, Preface to the selected papers on spatially explicit landscape modelling: Current practices and challenges, Ecological Modelling, vol.220, issue.24, pp.3477-3480, 2009.
DOI : 10.1016/j.ecolmodel.2009.06.025
URL : https://hal.archives-ouvertes.fr/hal-00424087

M. Acevedo, D. Urban, and M. Ablan, Transition and Gap Models of Forest Dynamics, Ecological Applications, vol.5, issue.4, pp.1040-1055, 1995.
DOI : 10.2307/2269353

A. Veldkamp and P. Verburg, Modelling land use change and environmental impact, Journal of Environmental Management, vol.72, issue.1-2, pp.1-3, 2004.
DOI : 10.1016/j.jenvman.2004.04.004

R. Gardner, B. Milne, M. Turner, O. Neill, and R. , Neutral models for the analysis of broad-scale landscape pattern, Landscape Ecology, vol.11, issue.1, pp.19-28, 1987.
DOI : 10.1007/BF02275262

P. Prusinkiewicz, Modeling plant growth and development, Current Opinion in Plant Biology, vol.7, issue.1, pp.79-83, 2004.
DOI : 10.1016/j.pbi.2003.11.007

N. Dershowitz and J. Jouannaud, Rewrite Systems, Leeuwen Jv, 1990.
DOI : 10.1016/B978-0-444-88074-1.50011-1

C. Godin, Representing and encoding plant architecture: A review, Annals of Forest Science, vol.57, issue.5, pp.413-438, 2000.
DOI : 10.1051/forest:2000132
URL : https://hal.archives-ouvertes.fr/hal-00827475

W. Kurth, Morphological models of plant growth: Possibilities and ecological relevance, Ecological Modelling, vol.75, issue.76, pp.299-308, 1994.
DOI : 10.1016/0304-3800(94)90027-2

P. Prusinkiewicz, W. Remphrey, C. Davidson, and M. Hammel, Modeling the Architecture of Expanding Fraxinus-Pennsylvanica Shoots Using L-Systems, Canadian Journal of Botany-Revue Canadienne De Botanique, vol.72, pp.701-714, 1994.

A. Lindenmayer, Mathematical models for cellular interactions in development I. Filaments with one-sided inputs, Journal of Theoretical Biology, vol.18, issue.3, pp.280-315, 1968.
DOI : 10.1016/0022-5193(68)90079-9

P. Prusinkiewicz and A. Lindenmayer, The algorithmic beauty of plants, 2004.
DOI : 10.1007/978-1-4613-8476-2

P. Barbier-de-reuille, I. Bohn-courseau, K. Ljung, H. Morin, and N. Carraro, Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis, Proceedings of the National Academy of Sciences, vol.103, issue.5, pp.1627-1632, 2006.
DOI : 10.1073/pnas.0510130103
URL : https://hal.archives-ouvertes.fr/hal-00023247

C. Pradal, S. Dufour-kowalski, F. Boudon, C. Fournier, and C. Godin, OpenAlea, Proceedings of the 27th International Conference on Scientific and Statistical Database Management, SSDBM '15, pp.751-760, 2008.
DOI : 10.1145/2791347.2791365
URL : https://hal.archives-ouvertes.fr/hal-00831801

J. Giavitto and O. Michel, Modeling the topological organization of cellular processes, Biosystems, vol.70, issue.2, pp.149-163, 2003.
DOI : 10.1016/S0303-2647(03)00037-6

W. Kurth, Towards universality of growth grammars: Models of Bell, Pag???s, and Takenaka revisited, Annals of Forest Science, vol.57, issue.5, pp.543-554, 2000.
DOI : 10.1051/forest:2000141

R. Hemmerling, O. Kniemeyer, D. Lanwert, W. Kurth, and G. Buck-sorlin, The rule-based language XL and the modelling environment GroIMP illustrated with simulated tree competition, Functional Plant Biology, vol.35, issue.10, pp.739-750, 2008.
DOI : 10.1071/FP08052

T. Houet, T. Loveland, L. Hubert-moy, D. Napton, and C. Gaucherel, Exploring subtle land use and land cover changes: a framework for future landscape studies, Landscape Ecology, vol.99, issue.1, pp.249-266, 2010.
DOI : 10.1007/s10980-009-9362-8
URL : https://hal.archives-ouvertes.fr/hal-00389832

I. Newton, The recent declines of farmland bird populations in Britain: an appraisal of causal factors and conservation actions, Ibis, vol.47, issue.Suppl. 2, pp.579-600, 2004.
DOI : 10.1111/j.1474-919X.2004.00375.x

J. Nosberger, M. Messerli, and C. C. , Biodiversity in grassland, Annales de Zootechnie, vol.47, issue.5-6, pp.383-393, 1998.
DOI : 10.1051/animres:19980506
URL : https://hal.archives-ouvertes.fr/hal-00889739

S. Butler, J. Vickery, and K. Norris, Farmland Biodiversity and the Footprint of Agriculture, Science, vol.315, issue.5810, pp.381-384, 2007.
DOI : 10.1126/science.1136607

T. Houet and C. Gaucherel, Simulation dynamique et spatialement explicite d'un paysage agricole bocager, pp.489-516, 2007.
DOI : 10.3166/geo.17.491-516
URL : https://hal.archives-ouvertes.fr/hal-00424081

C. Thenail and J. Baudry, Variation of farm spatial land use pattern according to the structure of the hedgerow network (bocage) landscape: a case study in northeast Brittany, Agriculture, Ecosystems & Environment, vol.101, issue.1, pp.53-72, 2004.
DOI : 10.1016/S0167-8809(03)00199-3

J. Harte, A. Ostling, J. Green, and A. Kinzig, Biodiversity conservation: Climate change and extinction risk, Nature, vol.81, issue.6995, pp.145-148, 2004.
DOI : 10.1016/S0006-3207(97)00042-6

E. Gustafson, Minireview: Quantifying Landscape Spatial Pattern: What Is the State of the Art?, Ecosystems, vol.1, issue.2, pp.143-156, 1998.
DOI : 10.1007/s100219900011

H. Li and J. Reynolds, A Simulation Experiment to Quantify Spatial Heterogeneity in Categorical Maps, Ecology, vol.75, issue.8, pp.2446-2455, 1994.
DOI : 10.2307/1940898

C. Gaucherel, Multiscale heterogeneity map and associated scaling profile for landscape analysis, Landscape and Urban Planning, vol.82, issue.3, pp.95-102, 2007.
DOI : 10.1016/j.landurbplan.2007.01.022
URL : https://hal.archives-ouvertes.fr/hal-00196170

L. Ber, F. Napoli, and A. , The design of an object-based system for representing and classifying spatial structures and relations, Journal of Universal Computer Science, vol.8, pp.751-773, 2002.
URL : https://hal.archives-ouvertes.fr/inria-00100759

E. Becker and B. Breckling, Border Zones of Ecology and Systems Theory, Ecology Revisited Reflecting on Concepts, Advancing Science, pp.385-404, 2011.
DOI : 10.1007/978-90-481-9744-6_27

C. Gaucherel, F. Munoz, and S. Bérard, Equation or Algorithm: Differences and Choosing Between Them, Acta Biotheoretica, vol.13, issue.2, pp.67-79, 2011.
DOI : 10.1007/s10441-010-9119-4
URL : https://hal.archives-ouvertes.fr/halsde-00611729