Field guide to next-generation DNA sequencers, Molecular Ecology Resources, vol.463, issue.Suppl. 1, pp.759-769, 2011. ,
DOI : 10.1111/j.1755-0998.2011.03024.x
PIMS sequencing extension: a laboratory information management system for DNA sequencing facilities, BMC Research Notes, vol.4, issue.1, pp.48-58, 2011. ,
DOI : 10.1080/09687680802511766
SLIMS--a user-friendly sample operations and inventory management system for genotyping labs, Bioinformatics, vol.26, issue.14, pp.1808-1810, 2010. ,
DOI : 10.1093/bioinformatics/btq271
Galaxy: A platform for interactive large-scale genome analysis, Genome Research, vol.15, issue.10, pp.1451-1455, 2005. ,
DOI : 10.1101/gr.4086505
Ergatis: a web interface and scalable software system for bioinformatics workflows, Bioinformatics, vol.26, issue.12, 2010. ,
DOI : 10.1093/bioinformatics/btq167
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881353
Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990. ,
DOI : 10.1016/S0022-2836(05)80360-2
Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool, BMC Research Notes, p.149, 2011. ,
Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, vol.25, issue.14, pp.1754-1760, 2009. ,
DOI : 10.1093/bioinformatics/btp324
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705234
Fast and accurate long-read alignment with Burrows-Wheeler transform, Bioinformatics, vol.26, issue.5, pp.589-595, 2010. ,
DOI : 10.1093/bioinformatics/btp698
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2828108
Genome Project Data Processing Subgroup: The Sequence alignment/map (SAM) format and SAMtools, Bioinformatics, vol.25, pp.10002078-2079, 2009. ,
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities, Applied and Environmental Microbiology, vol.75, issue.23, pp.757537-7541, 2009. ,
DOI : 10.1128/AEM.01541-09
TopHat: discovering splice junctions with RNA-Seq, Bioinformatics, vol.25, issue.9, pp.1105-1111, 2009. ,
DOI : 10.1093/bioinformatics/btp120
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2672628
Identification of novel transcripts in annotated genomes using RNA-Seq, Bioinformatics, vol.27, issue.17, 2011. ,
DOI : 10.1093/bioinformatics/btr355