S. Alonso and J. A. Armour, MS205 minisatellite diversity in Basques: evidence for a pre-Neolithic component, Genome Res, vol.8, pp.1289-1298, 1998.

R. Andreassen, J. Lundsted, and B. Olaisen, Mutation at minisatellite locus DYF155S1: Allele length mutation rate is affected by age of progenitor, ELECTROPHORESIS, vol.8, issue.15, pp.2377-2383, 2002.
DOI : 10.1002/1522-2683(200208)23:15<2377::AID-ELPS2377>3.0.CO;2-8

J. A. Armour, P. C. Harris, and A. J. Jeffreys, Allelic diversity at minisatellite MS205 (D16S309): evidence for polarized variability, Human Molecular Genetics, vol.2, issue.8, pp.1137-1145, 1993.
DOI : 10.1093/hmg/2.8.1137

B. Behzadi and J. M. Steyaert, The Minisatellite Transformation Problem Revisited: A Run Length Encoded Approach, Proc of the 4th Workshop on Algorithms in Bioinformatics (WABI), pp.310-320, 2004.
DOI : 10.1007/978-3-540-30219-3_25

B. Behzadi and J. M. Steyaert, An Improved Algorithm for Generalized Comparison of Minisatellites, J. of Discrete Algorithms, vol.3, pp.2-4375, 2005.

G. Benson, L. T. Dong, R. Schneider, P. Bork, D. Brutlag et al., Reconstructing the Duplication History of a Tandem Repeat, Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology (ISMB), pp.44-53, 1999.

S. Bérard and E. Rivals, Comparison of minisatellites, J. of Computational Biology, vol.10, pp.3-4357, 2003.

P. Bois and A. J. Jeffreys, Minisatellite instability and germline mutation, Cellular and Molecular Life Sciences (CMLS), vol.55, issue.12, pp.1636-1648, 1999.
DOI : 10.1007/s000180050402

P. Bois, J. D. Stead, S. Bakshi, J. Williamson, R. Neumann et al., Isolation and Characterization of Mouse Minisatellites, Genomics, vol.50, issue.3, pp.50317-330, 1998.
DOI : 10.1006/geno.1998.5329

N. Bouzekri, P. G. Taylor, M. F. Hammer, and M. A. Jobling, Novel mutation processes in the evolution of a haploid minisatellite, MSY1: array homogenization without homogenization, Human Molecular Genetics, vol.7, issue.4, pp.655-664, 1998.
DOI : 10.1093/hmg/7.4.655

M. Brion, R. Cao, A. Salas, M. V. Lareu, and A. Carracedo, New method to measure minisatellite variant repeat variation in population genetic studies, American Journal of Human Biology, vol.2, issue.4, pp.421-429, 2002.
DOI : 10.1002/ajhb.10057

J. Buard and A. J. Jeffreys, Big, bad minisatellites, Nature Genetics, vol.13, issue.4, pp.327-328, 1997.
DOI : 10.1093/hmg/6.1.129

J. Buard and G. Vergnaud, Complex recombination events at the hypermutable minisatellite CEB1 (D2S90), Embo. J, vol.13, pp.3203-3210, 1994.
URL : https://hal.archives-ouvertes.fr/hal-01160661

C. Cummings and H. Zoghbi, Fourteen and counting: unraveling trinucleotide repeat diseases, Human Molecular Genetics, vol.9, issue.6, pp.909-916, 2000.
DOI : 10.1093/hmg/9.6.909

URL : http://hmg.oxfordjournals.org/cgi/content/short/9/6/909

O. Gascuel, BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data, Molecular Biology and Evolution, vol.14, issue.7, pp.685-695, 1997.
DOI : 10.1093/oxfordjournals.molbev.a025808

URL : https://hal.archives-ouvertes.fr/lirmm-00730410

M. E. Hurles, C. Irven, J. Nicholson, P. G. Taylor, F. R. Santos et al., European Y-Chromosomal Lineages in Polynesians: A Contrast to the Population Structure Revealed by mtDNA, The American Journal of Human Genetics, vol.63, issue.6, pp.1793-1806, 1998.
DOI : 10.1086/302147

A. J. Jeffreys, A. Macleod, K. Tamaki, D. L. Neil, and D. G. Monckton, Minisatellite repeat coding as a digital approach to DNA typing, Nature, vol.4, issue.6350, pp.204-209, 1991.
DOI : 10.1038/354204a0

A. J. Jeffreys, K. Tamaki, A. Macleod, D. G. Monckton, D. L. Neil et al., Complex gene conversion events in germline mutation at human minisatellites, Trends in Genetics, vol.10, issue.5, pp.136-181, 1994.
DOI : 10.1016/0168-9525(94)90087-6

A. J. Jeffreys, V. Wilson, and S. L. Thein, Individual-specific ???fingerprints??? of human DNA, Nature, vol.8, issue.6023, pp.76-79, 1985.
DOI : 10.1038/316076a0

M. A. Jobling, N. Bouzekri, and P. G. Taylor, Hypervariable digital DNA codes for human paternal lineages: MVR-PCR at the Y-specific minisatellite, MSY1 (DYF155S1), Human Molecular Genetics, vol.7, issue.4, pp.1643-653, 1998.
DOI : 10.1093/hmg/7.4.643

M. A. Jobling and C. Tyler-smith, New uses for new haplotypes, Trends in Genetics, vol.16, issue.8, pp.356-362, 2000.
DOI : 10.1016/S0168-9525(00)02057-6

L. Flèche, P. Hauck, Y. Onteniente, L. Prieur, A. Denoeud et al., A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis, BMC Microbiol, vol.1, issue.12, 2001.

C. A. May, A. J. Jeffreys, and J. A. Armour, Mutation rate heterogeneity and the generation of allele diversity at the human minisatellite MS205 (D16S309), Human Molecular Genetics, vol.5, issue.11, pp.1823-1833, 1996.
DOI : 10.1093/hmg/5.11.1823

R. D. Page and E. C. Holmes, Molecular Evolution: A Phylogenetic Approach, 1998.

E. Rivals, A SURVEY ON ALGORITHMIC ASPECTS OF TANDEM REPEATS EVOLUTION, International Journal of Foundations of Computer Science, vol.15, issue.02, pp.225-257, 2004.
DOI : 10.1142/S012905410400239X

URL : https://hal.archives-ouvertes.fr/lirmm-00108543

E. Rivals, C. Bruyère, C. Toffano-nioche, and A. Lecharny, Formation of the Arabidopsis Pentatricopeptide Repeat Family, PLANT PHYSIOLOGY, vol.141, issue.3, pp.825-839, 2006.
DOI : 10.1104/pp.106.077826

URL : https://hal.archives-ouvertes.fr/lirmm-00109042

M. Sammeth, T. Weniger, D. Harmsen, and J. Stoye, Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI), Proc. of the 5th Workshopon Algorithms in Bioinformatics (WABI), pp.276-290, 2005.
DOI : 10.1007/11557067_23

J. D. Stead and A. J. Jeffreys, Allele diversity and germline mutation at the insulin minisatellite, Human Molecular Genetics, vol.9, issue.5, pp.713-723, 2000.
DOI : 10.1093/hmg/9.5.713

URL : http://hmg.oxfordjournals.org/cgi/content/short/9/5/713

J. D. Stead and A. J. Jeffreys, Structural Analysis of Insulin Minisatellite Alleles Reveals Unusually Large Differences in Diversity between Africans and Non-Africans, The American Journal of Human Genetics, vol.71, issue.6, pp.1273-1284, 2002.
DOI : 10.1086/344513

K. Tamaki, C. A. May, Y. E. Dubrova, and A. J. Jeffreys, Extremely Complex Repeat Shuffling during Germline Mutation at Human Minisatellite B6.7, Human Molecular Genetics, vol.8, issue.5, pp.879-888, 1999.
DOI : 10.1093/hmg/8.5.879

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.562.835

R. Gascuel and O. , BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data, Molecular Biology and Evolution, vol.14, issue.7, pp.685-695, 1997.
DOI : 10.1093/oxfordjournals.molbev.a025808

URL : https://hal.archives-ouvertes.fr/lirmm-00730410

J. D. Stead and A. J. Jeffreys, Allele diversity and germline mutation at the insulin minisatellite, Human Molecular Genetics, vol.9, issue.5, pp.713-723, 2000.
DOI : 10.1093/hmg/9.5.713