STAND, a class of P-Loop NTPases including animal and plant regulators of programmed cell death: multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer, 2004. ,
, J. Mol. Biol, vol.343, pp.1-28
Wheel of life, wheel of death: a mechanistic insight into signaling by STAND proteins, Structure, vol.17, pp.172-182, 2009. ,
Evolutionary relationships and structural mechanisms of AAA+ proteins, Annu. Rev. Biophys. Biomol. Struct, vol.35, pp.93-114, 2006. ,
Direct interaction of resistance gene and avirulence gene products confers rice blast resistance, EMBO J, vol.19, pp.4004-4014, 2000. ,
A complex signaling module governs the activity of MalT, the prototype of an emerging transactivator family, Proc. Natl. Acad. Sci. U.S.A, vol.98, pp.435-440, 2001. ,
Regulatory regions and critical residues of NOD2 involved in muramyl dipeptide recognition, EMBO J, vol.23, pp.1587-1597, 2004. ,
A structure of the human apoptosome at 12.8 ? A resolution provides insights into this cell death platform, Structure, vol.13, pp.1725-1735, 2005. ,
How 'arm-twisting' by the inducer triggers activation of the MalT transcription factor, a typical signal transduction ATPase with numerous domains (STAND), Nucleic Acids Res, vol.43, pp.3089-3099, 2015. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01160453
, , 2016.
Molecular basis for specific recognition of bacterial ligands by NAIP/NLRC4 inflammasomes, Mol. Cell, vol.54, pp.17-29, 2014. ,
,
, Plant Physiol, vol.162, pp.1510-1528
Comparative analysis of the flax immune receptors L6 and L7 suggests an equilibrium-based switch activation model, Plant Cell, vol.28, pp.146-159, 2016. ,
Crystal structure of NLRC4 reveals its autoinhibition mechanism, Science, vol.341, pp.172-175, 2013. ,
Crystal structure of full-length Apaf-1: how the death signal is relayed in the mitochondrial pathway of apoptosis, Structure, vol.19, pp.1074-1083, 2011. ,
The NBS-LRR architectures of plant R-proteins and metazoan NLRs evolved in independent events, Proc. Natl. Acad. Sci. U.S.A, vol.114, pp.1063-1068, 2017. ,
A dual role for the inducer in signalling by MalT, a signal transduction ATPase with numerous domains (STAND), Mol. Microbiol, vol.90, pp.1309-1323, 2013. ,
Organization and transcriptional regulation of the Escherichia coli K-12 D-serine tolerance locus, J. Bacteriol, vol.177, pp.6456-6461, 1995. ,
DNA sequence elements located immediately upstream of the-10 hexamer in Escherichia coli promoters: a systematic study, Nucleic Acids Res, vol.28, pp.1864-1870, 2000. ,
Protein production by auto-induction in high density shaking cultures, Protein Exp. Purif, vol.41, pp.207-234, 2005. ,
How integration of positive and negative regulatory signals by a STAND signaling protein depends on ATP hydrolysis, Mol. Cell, vol.28, pp.187-199, 2007. ,
, XDS. Acta Crystallogr. Sect. D: Biol. Crystallogr, vol.66, pp.125-132, 2010.
Integration, scaling, space-group assignment and post-refinement, Acta Crystallogr. Sect. D: Biol. Crystallogr, vol.66, pp.133-144, 2010. ,
A short history of SHELX, Acta Crystallogr. Sect. A: Found. Crystallogr, vol.64, pp.112-122, 2008. ,
Phaser crystallographic software, J. Appl. Crystallogr, vol.40, pp.658-674, 2007. ,
Combining constraints for electron-density modification, Methods Enzymol, vol.277, pp.53-64, 1997. ,
A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core, J. Mol. Biol, vol.430, pp.2237-2243, 2017. ,
Features and development of Coot, Acta Crystallogr. Sect. D: Biol. Crystallogr, vol.66, pp.486-501, 2010. ,
PHENIX: a comprehensive Python-based system for macromolecular structure solution, Acta Crystallogr. Sect. D: Biol. Crystallogr, vol.66, pp.213-221, 2010. ,
Overview of the CCP4 suite and current developments, 2011. ,
, Acta Crystallogr. Sect. D: Biol. Crystallogr, vol.67, pp.235-242
MolProbity: all-atom structure validation for macromolecular crystallography, Acta Crystallogr. Sect. D: Biol. Crystallogr, vol.66, pp.12-21, 2010. ,
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization, Briefings Bioinf, 2017. ,
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses, Bioinformatics, vol.25, pp.1972-1973, 2009. ,
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0, Syst. Biol, vol.59, pp.307-321, 2010. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00511784
CLANS: a Java application for visualizing protein families based on pairwise similarity, Bioinformatics, vol.20, pp.3702-3704, 2004. ,
Comparative protein modelling by satisfaction of spatial restraints, J. Mol. Biol, vol.234, pp.779-815, 1993. ,
Crystal structure of transcription factor MalT domain III: A domain helix repeat fold implicated in regulated oligomerization, Structure, vol.9, pp.1051-1060, 2001. ,
Two domains of MalT, the activator of the Escherichia coli maltose regulon, bear determinants essential for anti-activation by MalK, J. Mol. Biol, vol.347, pp.1-10, 2005. ,
DNA-binding proteins and evolution of transcription regulation in the archaea, Nucleic Acids Res, vol.27, pp.4658-4670, 1999. ,
Crystal structure of NOD2 and its implications in human disease, Nat. Commun, vol.7, p.11813, 2016. ,
TPR proteins: the versatile helix, Trends Biochem. Sci, vol.28, pp.655-662, 2003. ,
Dali server update, Nucleic Acids Res, vol.44, pp.351-355, 2016. ,
Design of stable alpha-helical arrays from an idealized TPR motif, Structure, vol.11, pp.497-508, 2003. ,
Structure of the apoptotic protease-activating factor 1 bound to ADP, Nature, vol.434, pp.926-933, 2005. ,
What curves alpha-solenoids? Evidence for an alpha-helical toroid structure of Rpn1 and Rpn2 proteins of the 26 S proteasome, J. Biol. Chem, vol.277, pp.49791-49798, 2002. ,
Atomic structure of the apoptosome: mechanism of cytochrome c-and dATP-mediated activation of Apaf-1, Genes Dev, vol.29, pp.2349-2361, 2015. ,
Global flexibility in a sensory receptor: A site-directed cross-linking approach, Science, vol.237, pp.1596-1600, 1987. ,
The inducer maltotriose binds in the central cavity of the tetratricopeptide-like sensor domain of MalT, a bacterial STAND transcription factor, Mol. Microbiol, vol.77, pp.628-641, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00552641
Self-association of the Escherichia coli transcription activator MalT in the presence of maltotriose and ATP, J. Biol. Chem, vol.274, pp.33220-33226, 1999. ,
Conserved motifs involved in ATP hydrolysis by MalT, a signal transduction ATPase with numerous domains from Escherichia coli, J. Bacteriol, vol.192, pp.5181-5191, 2010. ,
Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin, Mol. Biol. Evol, vol.27, pp.1449-1459, 2010. ,
Sequence determinants of specific pattern-recognition of bacterial ligands by the NAIP-NLRC4 inflammasome, Cell Discov, vol.4, p.22, 2018. ,
Structural and biochemical basis for induced self-propagation of NLRC4, Science, vol.350, pp.399-404, 2015. ,
Mechanism of Bcl-2 and Bcl-X(L) inhibition of NLRP1 inflammasome: loop domain-dependent suppression of ATP binding and oligomerization, Proc. Natl. Acad. Sci. U.S.A, vol.106, pp.3935-3940, 2009. ,
Calcium blocks formation of apoptosome by preventing nucleotide exchange in Apaf-1, Mol. Cell, vol.25, pp.181-192, 2007. ,
A new mechanism for the control of a prokaryotic transcriptional regulator: antagonistic binding of positive and negative effectors, Mol. Microbiol, vol.35, pp.765-776, 2000. ,
MalK, the ATP-binding cassette component of the Escherichia coli maltodextrin transporter, inhibits the transcriptional activator MalT by antagonizing inducer binding, J. Biol. Chem, vol.279, pp.33123-33130, 2004. ,
Structural model of MalK, the ABC subunit of the maltose transporter of Escherichia coli: implications for mal gene regulation, inducer exclusion, and subunit assembly, J. Biol. Chem, vol.277, pp.3708-3717, 2002. ,
The activities of the Escherichia coli MalK protein in maltose transport, regulation, and inducer exclusion can be separated by mutations, J. Bacteriol, vol.173, pp.2180-2186, 1991. ,
Alternating access in maltose transporter mediated by rigid-body rotations, Mol. Cell, vol.33, pp.528-536, 2009. ,
The ABC transporter MalFGK(2) sequesters the MalT transcription factor at the membrane in the absence of cognate substrate, Mol. Microbiol, vol.85, pp.632-647, 2012. ,