Categorical data analysis, pp.56-83, 2002. ,
Analysis of ordinal categorical data, pp.56-69, 2010. ,
DOI : 10.1002/9780470594001
Mixed Hidden Markov Models, Journal of the American Statistical Association, vol.102, issue.477, pp.201-210, 2007. ,
DOI : 10.1198/016214506000001086
Regression and ordered categorical variables, Journal of the Royal Statistical Society. Series B (Methodological), vol.92, pp.1-30, 1984. ,
DOI : 10.2307/2346654
Plant Architecture: A Dynamic, Multilevel and Comprehensive Approach to Plant Form, Structure and Ontogeny, Annals of Botany, vol.99, issue.3, pp.375-407, 2007. ,
DOI : 10.1093/aob/mcl260
Log-concave probability and its applications, Economic theory, vol.26, issue.40, pp.445-469, 2005. ,
A note on maximum likelihood estimation for regression models using grouped data, Journal of the Royal Statistical Society. Series B (Methodological), vol.40, pp.41-45, 1981. ,
Identifying ontogenetic, environmental and individual components of forest tree growth, Annals of Botany, vol.104, issue.5, pp.883-896, 2009. ,
DOI : 10.1093/aob/mcp189
URL : https://hal.archives-ouvertes.fr/hal-00423945
Stochastic models for heterogeneous DNA sequences, Bulletin of Mathematical Biology, vol.45, issue.1, pp.79-94, 1989. ,
DOI : 10.1007/BF02458837
A new maximum likelihood gradient algorithm for on-line hidden Markov model identification, Proceedings of the 1998 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP '98 (Cat. No.98CH36181), pp.2261-2264, 1998. ,
DOI : 10.1109/ICASSP.1998.681599
Regression Models and Life-Tables, Journal of the Royal Statistical Society. Series B (Methodological), pp.187-220, 1972. ,
DOI : 10.1007/978-1-4612-4380-9_37
Review of rd luce, individual choice behavior: A theoretical analysis, American Economic Review, vol.50, issue.46, pp.186-188, 1960. ,
Maximum likelihood from incomplete data via the em algorithm, Journal of the Royal Statistical Society. Series B (Methodological), pp.1-38, 1977. ,
An introduction to generalized linear models. CRC Pr I Llc, pp.34-131, 2002. ,
Manipulation in treatment of low back pain: a multicentre study., BMJ, vol.2, issue.5964, pp.161-208, 1975. ,
DOI : 10.1136/bmj.2.5964.161
Multivariate statistical modelling based on generalized linear models, pp.36-58, 2001. ,
Variable duration models for speech, Proc. Symposium on the application of hidden Markov models to text and speech, pp.143-179, 1980. ,
Finite mixture and Markov switching models, p.107, 2006. ,
Age States of Plants of Various Growth Forms: A Review, The Journal of Ecology, vol.68, issue.2, pp.675-696, 1980. ,
DOI : 10.2307/2259429
A Multiscale Model of Plant Topological Structures, Journal of Theoretical Biology, vol.191, issue.1, pp.1-46, 1998. ,
DOI : 10.1006/jtbi.1997.0561
URL : https://hal.archives-ouvertes.fr/hal-00827484
Review of several stochastic speech unit models, Computer Speech & Language, vol.6, issue.4, pp.377-402, 1992. ,
DOI : 10.1016/0885-2308(92)90030-8
Estimating Hidden Semi-Markov Chains From Discrete Sequences, Journal of Computational and Graphical Statistics, vol.12, issue.3, pp.604-639, 2003. ,
DOI : 10.1198/1061860032030
Hidden hybrid Markov/semi-Markov chains, Computational Statistics & Data Analysis, vol.49, issue.3, pp.663-688, 2005. ,
DOI : 10.1016/j.csda.2004.05.033
Explicit state occupancy modelling by hidden semi-Markov models: application of Derin's scheme, Computer Speech & Language, vol.4, issue.2, pp.167-192, 1990. ,
DOI : 10.1016/0885-2308(90)90003-O
Pattern Analysis in Branching and Axillary Flowering Sequences, Journal of Theoretical Biology, vol.212, issue.4, pp.481-520, 2001. ,
DOI : 10.1006/jtbi.2001.2392
Analysing growth components in trees, Journal of Theorical Biology, pp.418-447, 2007. ,
Effects of shoot bending on lateral fate and hydraulics: invariant and changing traits across five apple genotypes, Journal of experimental botany, issue.13 11, pp.583537-3547, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-01189253
The elements of statistical learning: data mining, inference and prediction. The Mathematical Intelligencer, pp.83-85, 2005. ,
Synchronization of growth, branching and flowering processes in the South American tropical tree Cecropia obtusa (Cecropiaceae), American Journal of Botany, vol.89, issue.7, pp.1180-1187, 2002. ,
DOI : 10.3732/ajb.89.7.1180
URL : https://hal.archives-ouvertes.fr/hal-00827469
Structures répétitives spatiales et spatio-temporelles des plantes, Phytomorphology, vol.49, pp.377-404, 1999. ,
The Equivalence of Two Models for Ordinal Data, Biometrika, vol.72, issue.1, pp.206-207, 1985. ,
DOI : 10.2307/2336352
The influence of shoot growth on the pattern of axillary development on the long shoots of young apple trees (malus domestica borkh.). International journal of plant sciences, pp.283-296, 1998. ,
Continuously variable duration hidden Markov models for automatic speech recognition, Computer Speech & Language, vol.1, issue.1, pp.29-45, 1986. ,
DOI : 10.1016/S0885-2308(86)80009-2
A comparison of prediction accuracy, complexity, and training time of thirty-three old and new classification algorithms, Machine Learning, vol.40, issue.3, pp.203-228, 2000. ,
DOI : 10.1023/A:1007608224229
Individual choice behavior, p.127, 1959. ,
Binary-choice constraints and random utility indicators, Proceedings of a Symposium on Mathematical Methods in the Social Sciences, p.127, 1960. ,
DOI : 10.1007/978-94-010-9276-0_9
A rasch model for partial credit scoring, Psychometrika, vol.47, issue.2, pp.149-174, 1982. ,
DOI : 10.1007/BF02296272
Analysing qualitative data, p.73, 1961. ,
A class of parametric models for the analysis of square contingency tables with ordered categories, Biometrika, vol.65, issue.2, pp.413-418, 1978. ,
DOI : 10.1093/biomet/65.2.413
Regression models for ordinal data, Journal of the Royal Statistical Society. Series B (Methodological), pp.109-142, 1980. ,
Conditional logit analysis of qualitative choice behavior, p.38, 1973. ,
Conditional logit analysis of qualitative choice analysis, Frontiers in Econometrics, vol.12, issue.119, pp.105-142, 1974. ,
The Choice Theory Approach to Market Research, Marketing Science, vol.5, issue.4, pp.275-297, 1986. ,
DOI : 10.1287/mksc.5.4.275
Modelling the choice of residential location Institute of Transportation Studies, pp.82-85, 1978. ,
Alternative parameterizations in business tendency surveys, ZOR Zeitschrift f???r Operations Research Methods and Models of Operations Research, vol.15, issue.2, pp.143-156, 1990. ,
DOI : 10.1007/BF01415977
Generalized linear models, Journal of the Royal Statistical Society. Series A (General), vol.28, pp.370-384, 1972. ,
Stem Growth and Epicormic Branch Formation in Understorey Beech Trees (Fagus sylvatica L.), Annals of Botany, vol.87, issue.6, pp.737-750, 2001. ,
DOI : 10.1006/anbo.2001.1398
Integrative models for analyzing jointly shoot growth and branching patterns, 7th International Workshop on Functional Structural Plant Models, p.118, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01269303
A unifying framework for specifying generalized linear models for categorical data, 28th International Workshop on Statistical Modeling, p.117, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00808270
Concavity of the Log Likelihood, Journal of the American Statistical Association, vol.46, issue.373, pp.103-106, 1981. ,
DOI : 10.1080/01621459.1981.10477613
A tutorial on hidden markov models and selected applications in speech recognition, Proceedings of the IEEE, pp.257-286, 1989. ,
Similarities and gradients in growth unit branching patterns during ontogeny in 'Fuji' apple trees: a stochastic approach, Journal of Experimental Botany, vol.57, issue.12, pp.3131-3143, 2006. ,
DOI : 10.1093/jxb/erl075
URL : https://hal.archives-ouvertes.fr/hal-00120198
Explicit modelling of state occupancy in hidden Markov models for automatic speech recognition, ICASSP '85. IEEE International Conference on Acoustics, Speech, and Signal Processing, pp.5-8, 1985. ,
DOI : 10.1109/ICASSP.1985.1168477
Patterns in plant development, p.19, 1989. ,
DOI : 10.1017/CBO9780511626227
Deciphering the developmental plasticity of walnut saplings in relation to climatic factors and light environment, Journal of Experimental Botany, vol.62, issue.15, pp.625283-5296, 2011. ,
DOI : 10.1093/jxb/err115
URL : https://hal.archives-ouvertes.fr/hal-00828855
Direct maximization of the likelihood of a hidden Markov model, Computational Statistics & Data Analysis, vol.52, issue.9, pp.4147-4160, 2008. ,
DOI : 10.1016/j.csda.2008.01.029
Compound Regression Models for Ordered Categorical Data, Biometrical Journal, vol.67, issue.3, pp.259-272, 1989. ,
DOI : 10.1002/bimj.4710310302
Sequential item response models with an ordered response, British Journal of Mathematical and Statistical Psychology, vol.43, issue.1, pp.39-55, 1990. ,
DOI : 10.1111/j.2044-8317.1990.tb00925.x
Sequential models in categorical regression, Computational Statistics & Data Analysis, vol.11, issue.3, pp.275-295, 1991. ,
DOI : 10.1016/0167-9473(91)90086-H
Regression for categorical data, pp.83-103, 2012. ,
DOI : 10.1017/CBO9780511842061
On the existence and uniqueness of the maximum likelihood estimates for certain generalized linear models, Biometrika, vol.63, issue.1, pp.27-32, 1976. ,
DOI : 10.1093/biomet/63.1.27
The Plant as a Metapopulation, Annual Review of Ecology and Systematics, vol.10, issue.1, pp.109-145, 1979. ,
DOI : 10.1146/annurev.es.10.110179.000545
Generalized linear model for partially ordered data, Statistics in Medicine, vol.24, issue.5, pp.95-96, 2012. ,
DOI : 10.1002/sim.4318