H. Abe and K. Yamaguchishinozaki, Role of Arabidopsis MYC and MYB homologs in drought-and abscisic acid-regulated gene expression, Plant Cell, vol.9, issue.10, pp.1859-1868, 1997.

M. D. Adams and S. E. Celniker, The genome sequence of Drosophila melanogaster, Science, vol.287, issue.5461, pp.2185-2195, 2000.

S. N. Aitken and S. Yeaman, Adaptation, migration or extirpation: climate change outcomes for tree populations, Evolutionary Applications, vol.1, issue.1, pp.95-111, 2008.

F. Alagna and N. D'agostino, Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development, BMC Genomics, vol.10, issue.26, 2009.

C. D. Allen and A. K. Macalady, A global overview of drought and heat-induced tree mortality reveals emerging climate change risks for forests, Forest Ecology and Management, vol.259, issue.4, pp.660-684, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00457602

P. Alpert and E. L. Simms, The relative advantages of plasticity and fixity in different environments: when is it good for a plant to adjust?, Evolutionary Ecology, vol.16, issue.3, pp.285-297, 2002.

F. C. Alvim and S. M. Carolino, Enhanced accumulation of BiP in transgenic plants confers tolerance to water stress, Plant Physiology, vol.126, issue.3, pp.1042-1054, 2001.

K. Andries and P. Verhasselt, A diarylquinoline drug active on the ATP synthase of Mycobacterium tuberculosis, Science, vol.307, issue.5707, pp.223-227, 2005.

K. Apel and H. Hirt, Reactive oxygen species: Metabolism, oxidative stress, and signal transduction, Annual Review of Plant Biology, vol.55, pp.373-399, 2004.

X. Argout and J. Salse, The genome of Theobroma cacao, Nat Genet, vol.43, issue.2, p.101, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00855922

S. K. Arndt and S. J. Livesley, Quercitol and osmotic adaptation of field-grown Eucalyptus under seasonal drought stress, Plant Cell and Environment, vol.31, issue.7, pp.915-924, 2008.

G. Ashwell, Colorimetric analysis of sugar, Methods in Enzymology, vol.4, pp.73-105, 1957.

S. M. Assmann, Cyclic AMP as a Second Messenger in Higher Plants (Status and Future Prospects), Plant Physiology, vol.108, issue.3, pp.885-889, 1995.

N. Aubin-horth and S. C. Renn, Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity, Molecular Ecology, vol.18, issue.18, pp.3763-3780, 2009.

A. Barakat and D. S. Diloreto, Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection, BMC Plant Biology, vol.9, issue.51, 2009.

P. D. Barros and N. M. Soares-cavalcanti, In Silico Evaluation of Osmoprotectants in Eucalyptus Transcriptome, Computational Intelligence Methods for Bioinformatics and Biostatistics, vol.5488, pp.66-77, 2009.

D. Bartels and R. Sunkar, Drought and salt tolerance in plants, Critical Reviews in Plant Sciences, vol.24, issue.1, pp.23-58, 2005.

D. Bartels and R. Sunkar, Drought and salt tolerance in plants, Crit. Rev. in Plant Sci, pp.241-277, 2005.

C. G. Bartoli and M. Simontacchi, Drought and watering-dependent oxidative stress: effect on antioxidant content in Triticum aestivum L. leaves, Journal of Experimental Botany, vol.50, issue.332, pp.375-383, 1999.

M. Battaglia and Y. Olvera-carrillo, The enigmatic LEA proteins and other hydrophilins, Plant Physiology, vol.148, issue.1, pp.6-24, 2008.

N. Beaudoin and C. Serizet, Interactions between abscisic acid and ethylene signaling cascades, Plant Cell, vol.12, issue.7, pp.1103-1115, 2000.
URL : https://hal.archives-ouvertes.fr/hal-00161002

E. H. Beck and S. Fettig, Specific and unspecific responses of plants to cold and drought stress, Journal of Biosciences, vol.32, issue.3, pp.501-510, 2007.

F. Bedon and J. Majada, Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.), Plant Physiology and Biochemistry, vol.49, issue.1, pp.69-76, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02647579

D. Bellin and A. Ferrarini, Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species, BMC Genomics, vol.10, issue.555, 2009.

C. Boisvenue and S. W. Running, Impacts of climate change on natural forest productivity -evidence since the middle of the 20th century, Global Change Biology, vol.12, issue.5, pp.862-882, 2006.

C. Borel and A. Frey, Does engineering abscisic acid biosynthesis in Nicotiana plumbaginifolia modify stomatal response to drought?, Plant, Cell & Environment, vol.24, issue.5, pp.477-489, 2001.
URL : https://hal.archives-ouvertes.fr/hal-02676045

A. D. Bradshaw, The evolutionary significance of phenotypic plasticity in plants, 1965.

E. A. Bray, Plant responses to water deficit, Trends in Plant Science, vol.2, issue.2, pp.48-54, 1997.

E. A. Bray, Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genome, Plant, Cell & Environment, vol.25, issue.2, pp.153-161, 2002.

N. Breda and R. Huc, Temperate forest trees and stands under severe drought: a review of ecophysiological responses, adaptation processes and long-term consequences, Annals of Forest Science, vol.63, issue.6, pp.625-644, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02667194

R. P. Brondani and E. R. Williams, , 2006.

H. O. Buckman and N. C. Brady, Les Sols : Nature et propriétés Précis d'édaphologie, 1965.

O. M. Cabral and H. R. Rocha, The energy and water balance of a Eucalyptus plantation in southeast Brazil, Journal of Hydrology, vol.388, issue.3-4, pp.208-216, 2010.

P. A. Callinan and A. P. Feinberg, The emerging science of epigenomics, Human Molecular Genetics, vol.15, pp.95-101, 2006.

R. Calvet, , 2003.

. Sol and D. Fonctions,

J. M. Campion and M. Nkosana, Biomass and N and P pools in above-and belowground components of an irrigated and fertilised Eucalyptus grandis stand in South Africa, Australian Forestry, vol.69, issue.1, pp.48-57, 2006.

J. Carle and P. Holmgren, Wood from Planted Forests, Forest Products Journal, vol.58, issue.12, pp.6-18, 2008.

M. Carneiro and A. Fabiao, Effects of harrowing and fertilisation on understory vegetation and timber production of a Eucalyptus globulus Labill. plantation in Central Portugal, Forest Ecology and Management, vol.255, pp.591-597, 2008.

M. Chaisson and P. Pevzner, Fragment assembly with short reads, Bioinformatics, vol.20, issue.13, pp.2067-2074, 2004.

M. J. Chaisson and P. A. Pevzner, Short read fragment assembly of bacterial genomes, Genome Research, vol.18, issue.2, pp.324-330, 2008.

M. R. Chambel and J. Climent, Phenotypic plasticity: a useful framework for understanding adaptation in forest species, Investigacion Agraria, Sistemas y Recursos Forestales, vol.14, issue.3, pp.334-344, 2005.

K. Chartzoulakis and A. Patakas, Changes in water relations, photosynthesis and leaf anatomy induced by intermittent drought in two olive cultivars, Environmental and Experimental Botany, vol.42, issue.2, pp.113-120, 1999.

S. Cha-um and C. Kirdmanee, Effects of water stress induced by sodium chloride and mannitol on proline accumulation, photosynthetic abilities and growth characters of eucalyptus (<i>Eucalyptus camaldulensis&lt, New Forests, vol.40, issue.3, p.349, 2010.

M. M. Chaves and J. P. Maroco, Understanding plant responses to drought -from genes to the whole plant, Functional Plant Biology, vol.30, issue.3, pp.239-264, 2003.

L. M. Chevin and R. Lande, Adaptation, Plasticity, and Extinction in a Changing Environment: Towards a Predictive Theory, Plos Biology, vol.8, issue.4, 2010.

P. G. Cook and T. J. Hatton, Water balance of a tropical woodland ecosystem, Northern Australia: a combination of micro-meteorological, soil physical and groundwater chemical approaches, Journal of Hydrology (Amsterdam), vol.210, issue.1/4, pp.161-177, 1999.

F. Dahl and J. Stenberg, Multigene amplification and massively parallel sequencing for cancer mutation discovery, Proceedings of the National Academy of Sciences of the United States of America, vol.104, issue.22, pp.9387-9392, 2007.

R. A. Dalloul and J. A. Long, Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis, PLoS Biol, vol.8, issue.9, 2010.

M. Dassanayake and J. S. Haas, Shedding light on an extremophile lifestyle through transcriptomics, New Phytologist, vol.183, issue.3, pp.764-775, 2009.

J. Dat and S. Vandenabeele, Dual action of the active oxygen species during plant stress responses, Cellular and Molecular Life Sciences, vol.57, issue.5, pp.779-795, 2000.

T. M. Davis and M. E. Shields, The strawberry genome is coming into view, Acta Horticulturae, issue.842, pp.533-536, 2009.

S. Deschamps and M. A. Campbell, Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery, Molecular Breeding, vol.25, issue.4, pp.553-570, 2010.

M. L. Desprez-loustau and B. Marcais, Interactive effects of drought and pathogens in forest trees, Annals of Forest Science, vol.63, issue.6, pp.597-612, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00884010

T. J. Dewitt and A. Sih, Costs and limits of phenotypic plasticity, Trends in Ecology and Evolution, vol.13, pp.77-81, 1998.

M. K. Deyholos, Making the most of drought and salinity transcriptomics, Plant, Cell & Environment, vol.33, issue.4, pp.648-654, 2010.

P. L. Drake and D. S. Mendham, A comparison of growth, photosynthetic capacity and water stress in Eucalyptus globulus coppice regrowth and seedlings during early development, Tree Physiology, vol.29, issue.5, pp.663-674, 2009.

J. R. Ehleringer and T. A. Cooper, ON THE ROLE OF ORIENTATION IN REDUCING PHOTOINHIBITORY DAMAGE IN PHOTOSYNTHETIC-TWIG DESERT SHRUBS, Plant Cell and Environment, vol.15, issue.3, pp.301-306, 1992.

W. El-kayal and G. Keller, Regulation of tocopherol biosynthesis through transcriptional control of tocopherol cyclase during cold hardening in Eucalyptus gunnii, Physiologia Plantarum, vol.126, issue.2, pp.212-223, 2006.

K. Eldridge and J. Davidson, Eucalypt domestication and breeding, 1993.

A. L. Eveland and D. R. Mccarty, Transcript profiling by 3-Untranslated region sequencing resolves expression of gene families, Plant Physiology, vol.146, issue.1, pp.32-44, 2008.

E. Fao, State of the world's forests, 2009.

C. Foucart and E. Paux, Transcript profiling of a xylem vs phloem cDNA subtractive library identifies new genes expressed during xylogenesis in Eucalyptus, New Phytologist, vol.170, issue.4, pp.739-752, 2006.
URL : https://hal.archives-ouvertes.fr/hal-01565049

. Fra, Global Forest Resources Assessment 2010: main report, FAO Forestry Paper, issue.163, p.341, 2010.

J. S. Freeman and S. P. Whittock, QTL influencing growth and wood properties in Eucalyptus globulus, Tree Genetics & Genomes, vol.5, issue.4, pp.713-722, 2009.

M. J. Fullwood and C. L. Wei, Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses, Genome Research, vol.19, issue.4, pp.521-532, 2009.

M. C. Gamboa and S. Rasmussen-poblete, Isolation and characterization of a cDNA encoding a CBF transcription factor from E. globulus, Plant Physiology and Biochemistry, vol.45, issue.1, pp.1-5, 2007.

T. S. Gechev and F. Van-breusegem, Reactive oxygen species as signals that modulate plant stress responses and programmed cell death, Bioessays, vol.28, issue.11, pp.1091-1101, 2006.

P. A. Gilardoni and S. Schuck, SuperSAGE analysis of the Nicotiana attenuata transcriptome after fatty acid-amino acid elicitation (FAC): identification of early mediators of insect responses, BMC Plant Biology, vol.10, issue.66, 2010.

J. M. Gion and P. Rech, Mapping candidate genes in Eucalyptus with emphasis on lignification genes, Molecular Breeding, vol.6, issue.5, pp.441-449, 2000.
URL : https://hal.archives-ouvertes.fr/hal-02697368

D. Gonzalez-ballester and D. Casero, RNA-Seq Analysis of Sulfur-Deprived Chlamydomonas Cells Reveals Aspects of Acclimation Critical for Cell Survival, Plant Cell, vol.22, issue.6, pp.2058-2084, 2010.

S. C. Gonzalez-martinez and K. V. Krutovsky, Forest-tree population genomics and adaptive evolution, New Phytologist, vol.170, issue.2, pp.227-238, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02666859

A. Granier and M. Reichstein, Evidence for soil water control on carbon and water dynamics in European forests during the extremely dry year: 2003, Agricultural and Forest Meteorology, vol.143, issue.1-2, pp.123-145, 2007.

D. Grans and B. Hannrup, Genetic variation and relationships to growth traits for microfibril angle, wood density and modulus of elasticity in a Picea abies clonal trial in southern Sweden, Scandinavian Journal of Forest Research, vol.24, issue.6, pp.494-503, 2009.

D. Grattapaglia and M. Kirst, Eucalyptus applied genomics: from gene sequences to breeding tools, New Phytologist, vol.179, issue.4, pp.911-929, 2008.

F. Gugerli and L. Parducci, Ancient plant DNA: review and prospects, New Phytologist, vol.166, issue.2, pp.409-418, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02680800

A. Guisan and W. Thuiller, Predicting species distribution: offering more than simple habitat models, Ecology Letters, vol.8, issue.9, pp.993-1009, 2005.
URL : https://hal.archives-ouvertes.fr/halsde-00274246

S. Guo and Y. Zheng, Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types, BMC Genomics, vol.11, issue.384, 2010.

N. Hall, Advanced sequencing technologies and their wider impact in microbiology, Journal of Experimental Biology, vol.210, issue.9, pp.1518-1525, 2007.

B. Halliwell and J. M. Gutteridge, Free radicals in biology and medicine, 1999.

J. L. Hamrick, Response of forest trees to global environmental changes, Forest Ecology and Management, vol.197, issue.1-3, pp.323-335, 2004.

J. L. Hamrick, Response of forest trees to global environmental changes, Forest Ecology and Management, vol.197, issue.1-3, pp.323-335, 2004.

D. Hernandez and P. Francois, De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer, Genome Research, vol.18, issue.5, pp.802-809, 2008.

S. Hong-bo and C. Li-ye, Calcium as a versatile plant signal transducer under soil water stress, BioEssays, vol.30, issue.7, pp.634-641, 2008.

S. W. Huang and R. Q. Li, The genome of the cucumber, Cucumis sativus L, Nature Genetics, vol.41, issue.12, pp.1275-1304, 2009.

X. Huang and X. Wei, Genome-wide association studies of 14 agronomic traits in rice landraces, Nat Genet, vol.42, issue.11, pp.961-967, 2010.

R. M. Hubbard and J. Stape, Effects of irrigation on water use and water use efficiency in two fast growing Eucalyptus plantations, Forest Ecology and Management, vol.259, issue.9, pp.1714-1721, 2010.

. Ipcc, Contribution of Working Groups I, II and III to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, 2007.

M. Jackson, Hormones from roots as signals for the shoots of stressed plants, Trends in Plant Science, vol.2, issue.1, pp.22-28, 1997.

M. A. Jenks and P. M. Hasegawa, Transcriptome Analysis of Plant Drought and Salt Stress Response. Advances in Molecular Breeding Toward Drought and Salt Tolerant Crops, pp.261-283, 2007.

H. Jiang and W. H. Wong, Statistical inferences for isoform expression in RNA-Seq, Bioinformatics, vol.25, issue.8, pp.1026-1032, 2009.

J. Julliard and F. Pelese, TL-DNA TRANSFORMATION DECREASES ABA-LEVEL, Physiologia Plantarum, vol.88, issue.4, pp.654-660, 1993.
URL : https://hal.archives-ouvertes.fr/hal-02703539

A. S. Jump and J. Penuelas, Running to stand still: adaptation and the response of plants to rapid climate change, Ecology Letters, vol.8, issue.9, pp.1010-1020, 2005.

P. D. Kube and C. A. Raymond, Genetic parameters for diameter, basic density, cellulose content and fibre properties for Eucalyptus nitens, Forest Genetics, vol.8, issue.4, pp.285-294, 2001.

C. Kulheim and S. Yeoh, Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways, BMC Genomics, vol.10, 2009.

J. P. Laclau and M. Arnaud, Spatial distribution of Eucalyptus roots in a deep sandy soil in the Congo: relationships with the ability of the stand to take up water and nutrients, vol.21, pp.631-632, 2001.
URL : https://hal.archives-ouvertes.fr/hal-02674249

T. Lam-son-phan and T. Urao, Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis, Proceedings of the National Academy of Sciences of the United States of America, vol.104, issue.51, pp.20623-20628, 2007.

T. Lam-son-phan and K. Nakashima, Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive ciselement in the early responsive to dehydration stress 1 promoter, Plant Cell, vol.16, issue.9, pp.2481-2498, 2004.

E. S. Lander and L. M. Linton, Initial sequencing and analysis of the human genome, Nature, vol.409, issue.6822, pp.860-921, 2001.

D. W. Lawlor, The effects of water deficit on photosynthesis. Environment and plant metabolism, N. Smirnoff. Oxford, pp.129-160, 1995.

J. Levitt, Responses of Plants to Environmental Stresses, 1972.

R. Q. Li and W. Fan, The sequence and de novo assembly of the giant panda genome, Nature, vol.463, issue.7279, pp.311-317, 2010.

C. Macfarlane and C. Bond, Transpiration and hydraulic traits of old and regrowth eucalypt forest in southwestern Australia, Forest Ecology and Management, vol.260, issue.1, pp.96-105, 2010.

M. Margulies and M. Egholm, Genome sequencing in microfabricated highdensity picolitre reactors, Nature, vol.437, issue.7057, pp.376-380, 2005.

J. C. Marioni and C. E. Mason, RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays, Genome Research, vol.18, issue.9, pp.1509-1517, 2008.

C. M. Marques and R. P. Brondani, Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species, Theoretical and Applied Genetics, vol.105, issue.2-3, pp.474-478, 2002.

A. Martinez-meier and L. Sanchez, Ring density record of phenotypic plasticity and adaptation to drought in Douglas-fir, Forest Ecology and Management, vol.258, issue.5, pp.860-867, 2009.
URL : https://hal.archives-ouvertes.fr/hal-02655697

F. B. Martins and N. A. Streck, Soil water defcit affecting transpiration, growth and development of seedlings of two Eucalyptus species, Revista Brasileira De Ciencia Do Solo, vol.32, issue.3, pp.1297-1306, 2008.

C. Maurel and M. J. Chrispeels, Aquaporins. A molecular entry into plant water relations, Plant Physiology, vol.125, issue.1, pp.135-138, 2001.
URL : https://hal.archives-ouvertes.fr/hal-02790524

A. T. M&apos;bou and C. Jourdan, Root elongation in tropical Eucalyptus plantations: effect of soil water content, Annals of Forest Science, vol.65, issue.6, pp.609-610, 2008.

A. Merchant and S. K. Arndt, Seasonal changes in carbohydrates, cyclitols, and water relations of 3 field grown Eucalyptus species from contrasting taxonomy on a common site, Annals of Forest Science, vol.67, issue.1, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00883564

A. Merchant and A. Callister, Contrasting physiological responses of six Eucalyptus species to water deficit, Annals of Botany, vol.100, pp.1507-1515, 2007.

A. Merchant and A. D. Peuke, Phloem sap and leaf delta C-13, carbohydrates, and amino acid concentrations in Eucalyptus globulus change systematically according to flooding and water deficit treatment, Journal of Experimental Botany, vol.61, issue.6, pp.1785-1793, 2010.

M. L. Metzker, APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies -the next generation, Nature Reviews Genetics, vol.11, issue.1, pp.31-46, 2010.

C. D. Millar and L. Huynen, New developments in ancient genomics, Trends in Ecology & Evolution, vol.23, issue.7, pp.386-393, 2008.

B. Modrek and C. Lee, A genomic view of alternative splicing, Nature Genetics, vol.30, issue.1, pp.13-19, 2002.

O. Morozova and M. A. Marra, Applications of next-generation sequencing technologies in functional genomics, Genomics, vol.92, issue.5, pp.255-264, 2008.

T. Munnik, Phosphatidic acid: an emerging plant lipid second messenger, Trends in Plant Science, vol.6, issue.5, pp.227-233, 2001.

A. A. Myburg and B. M. Potts, Eucalypts. Genome Mapping and Molecular Breeding in Plants, Forest Trees. C. Kole, vol.7, pp.115-160, 2007.

K. L. Nielsen and A. L. Hogh, DeepSAGE -digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples, Nucleic Acids Research, vol.34, 2006.

Y. Nouvellon and J. P. Laclau, Within-stand and seasonal variations of specific leaf area in a clonal Eucalyptus plantation in the Republic of Congo, Forest Ecology and Management, vol.259, issue.9, pp.1796-1807, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02663854

E. Novaes and D. R. Drost, High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome, BMC Genomics, vol.9, issue.312, 2008.

M. Nowrousian, Next-Generation Sequencing Techniques for Eukaryotic Microorganisms: Sequencing-Based Solutions to Biological Problems, Eukaryotic Cell, vol.9, issue.9, pp.1300-1310, 2010.

A. Oshlack and M. J. Wakefield, Transcript length bias in RNA-seq data confounds systems biology, Biology Direct, vol.4, 2009.

N. J. Ouborg and F. Angeloni, An essay on the necessity and feasibility of conservation genomics, Conservation Genetics, vol.11, issue.2, pp.643-653, 2010.

N. J. Ouborg and W. H. Vriezen, An ecologist's guide to ecogenomics, Journal of Ecology, vol.95, issue.1, pp.8-16, 2007.

J. Paiva and E. Prat, Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries, BMC Genomics, vol.12, issue.1, p.137, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02645097

M. Parry and C. Rosenzweig, Climate change, and risk global food supply of hunger, Philosophical Transactions of the Royal Society B-Biological Sciences, vol.360, pp.2125-2138, 1463.

E. Paux and M. Tamasloukht, Identification of genes preferentially expressed during wood formation in Eucalyptus, Plant Molecular Biology, vol.55, issue.2, pp.263-280, 2004.
URL : https://hal.archives-ouvertes.fr/hal-01565051

R. J. Petit and C. Bodenes, Hybridization as a mechanism of invasion in oaks, New Phytologist, vol.161, issue.1, pp.151-164, 2004.
URL : https://hal.archives-ouvertes.fr/hal-02677680

R. J. Petit and A. Hampe, Some evolutionary consequences of being a tree, Annual Review of Ecology Evolution and Systematics, vol.37, pp.187-214, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02667490

M. Pigliucci, How organisms respond to environmental changes: From phenotypes to molecules (and vice versa), Trends in Ecology & Evolution, vol.11, issue.4, pp.168-173, 1996.

M. Pigliucci, Modelling phenotypic plasticity .2. Do genetic correlations matter?, Heredity, vol.77, pp.453-460, 1996.

M. Pigliucci and C. D. Schlichting, Reaction norms of Arabidopsis .4. Relationships between plasticity and fitness, Heredity, vol.76, pp.427-436, 1996.

C. Plomion and C. Lalanne, Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins, Proteomics, vol.6, issue.24, pp.6509-6527, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02663888

F. S. Poke and R. E. Vaillancourt, Genomic research in Eucalyptus, Genetica, vol.125, issue.1, pp.79-101, 2005.

E. W. Pook and A. M. Gill, Long-term variation of litter fall, canopy leaf area and flowering in a Eucalyptus maculata forest on the south coast of New South Wales, Australian Journal of Botany, vol.45, issue.5, pp.737-755, 1997.

H. Poorter and O. Nagel, The role of biomass allocation in the growth response of plants to different levels of light, CO2, nutrients and water: a quantitative review, vol.27, pp.1191-1191, 2000.

M. Pop and S. L. Salzberg, Bioinformatics challenges of new sequencing technology, Trends in Genetics, vol.24, issue.3, pp.142-149, 2008.

B. M. Potts and R. J. Wiltshire, Eucalypt genetics and genecology. Eucalypt Ecology: Individuals to Ecosystems, pp.56-91, 1997.

J. Ragoussis, Genotyping Technologies for Genetic Research, Annual Review of Genomics and Human Genetics, vol.10, pp.117-133, 2009.

V. Reiser and D. C. Raitt, Yeast osmosensor Sln1 and plant cytokinin receptor Cre1 respond to changes in turgor pressure, Journal of Cell Biology, vol.161, issue.6, pp.543-550, 2003.

H. Shin and M. Hirst, Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags, BMC Biology, vol.6, 2008.

K. Shinozaki and K. Yamaguchishinozaki, Gene expression and signal transduction in water-stress response, Plant Physiology, vol.115, issue.2, pp.327-334, 1997.

K. Shinozaki and K. Yamaguchi-shinozaki, Gene networks involved in drought stress response and tolerance, Journal of Experimental Botany, vol.58, issue.2, pp.221-227, 2007.

K. Shinozaki and K. Yamaguchi-shinozaki, Regulatory network of gene expression in the drought and cold stress responses, Current Opinion in Plant Biology, vol.6, issue.5, pp.410-417, 2003.

F. C. Silva and A. Shvaleva, Responses to water stress in two Eucalyptus globulus clones differing in drought tolerance, Tree Physiology, vol.24, issue.10, pp.1165-1172, 2004.

J. Slate and J. Gratten, Gene mapping in the wild with SNPs: guidelines and future directions, Genetica, vol.136, issue.1, pp.97-107, 2009.

J. H. Snsteb and L. Gielly, Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate, Molecular Ecology Resources, vol.10, issue.6, pp.1009-1018, 2010.

N. M. Soares-cavalcanti and A. C. Wanderley-nogueira, Comparative In Silico Evaluation of MYB Transcription Factors in Eucalyptus, Sugarcane and Rice Transcriptomes, Computational Intelligence Methods for Bioinformatics and Biostatistics, vol.5488, pp.44-55, 2009.

S. Solomon and D. Qin, Climate change 2007: Synthesis Report. Contribution of Working Group I, II and III to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Summary for Policymakers, 2007.

D. J. Stackpole and R. E. Vaillancourt, Age trends in genetic parameters for growth and wood density in Eucalyptus globulus, Tree Genetics and Genomes, vol.6, issue.2, pp.179-193, 2010.

J. L. Stape and D. Binkley, The Brazil Eucalyptus Potential Productivity Project: Influence of water, nutrients and stand uniformity on wood production, Forest Ecology and Management, vol.259, issue.9, pp.1684-1694, 2010.

J. Stapley and J. Reger, Adaptation genomics: the next generation, Trends in Ecology & Evolution, vol.25, issue.12, pp.705-712, 2010.
URL : https://hal.archives-ouvertes.fr/hal-01945554

T. Urao and B. Yakubov, A transmembrane hybrid-type histidine kinase in arabidopsis functions as an osmosensor, Plant Cell, vol.11, issue.9, pp.1743-1754, 1999.

M. A. Valente and J. A. Faria, The ER luminal binding protein (BiP) mediates an increase in drought tolerance in soybean and delays drought-induced leaf senescence in soybean and tobacco, Journal of Experimental Botany, vol.60, issue.2, pp.533-546, 2009.

F. Valladares and D. Sanchez-gomez, Quantitative estimation of phenotypic plasticity: bridging the gap between the evolutionary concept and its ecological applications, Journal of Ecology, vol.94, issue.6, pp.1103-1116, 2006.

M. Van-kleunen and M. Fischer, Constraints on the evolution of adaptive phenotypic plasticity in plants, New Phytologist, vol.166, issue.1, pp.49-60, 2005.

N. J. Van-orsouw and R. C. Hogers, Complexity Reduction of Polymorphic Sequences (CRoPS (TM)): A Novel Approach for Large-Scale Polymorphism Discovery in Complex Genomes, Plos One, vol.2, issue.11, 2007.

J. C. Vega-arreguin and E. Ibarra-laclette, Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing, BMC Genomics, vol.10, issue.299, 2009.

R. Velasco and A. Zharkikh, The genome of the domesticated apple (Malus [times] domestica Borkh.), Nat Genet, vol.42, issue.10, pp.833-839, 2010.

J. C. Venter and M. D. Adams, The sequence of the human genome, Science, vol.291, issue.5507, p.1304, 2001.
URL : https://hal.archives-ouvertes.fr/hal-00465088

J. C. Vera and C. W. Wheat, Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing, Molecular Ecology, vol.17, issue.7, pp.1636-1647, 2008.

R. Vicentini and F. V. Sassaki, In silico evaluation of the Eucalyptus transcriptome, Genetics and Molecular Biology, vol.28, pp.487-495, 2005.

C. Violle and H. Castro, Intraspecific seed trait variations and competition: passive or adaptive response?, Functional Ecology, vol.23, issue.3, pp.612-620, 2009.

Y. Vitasse, Déterminisme environnemental et génétique de la phénologie des arbres de climat tempéré, 2009.

B. Wang and G. W. Guo, Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing, Nucleic Acids Research, vol.38, issue.15, pp.5075-5087, 2010.

L. K. Wang and Z. X. Feng, DEGseq: an R package for identifying differentially expressed genes from RNA-seq data, Bioinformatics, vol.26, issue.1, pp.136-138, 2010.

W. Wang and Y. Wang, Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing, BMC Genomics, vol.10, issue.9, 2009.

W. X. Wang and B. Vinocur, Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance, Planta, vol.218, issue.1, pp.1-14, 2003.

Z. Wang and M. Gerstein, RNA-Seq: a revolutionary tool for transcriptomics, Nature Reviews Genetics, vol.10, issue.1, pp.57-63, 2009.

. References-bibliographiques, J. P. Bouillet, and J. D. Nzila, Eucalyptus Plantations in the Equatorial Zone, on the Coastal Plains of the Congo. Site Management and productivity in Tropical Plantation Forests, 1998.

J. M. Brezard, Les eucalyptus introduits au Congo de 1953 à 1981, p.154, 1982.

M. M. Chaves and J. P. Maroco, Understanding plant responses to drought -from genes to the whole plant, Functional Plant Biology, vol.30, issue.3, pp.239-264, 2003.

J. P. Laclau and M. Arnaud, Spatial distribution of Eucalyptus roots in a deep sandy soil in the Congo: relationships with the ability of the stand to take up water and nutrients, vol.21, pp.631-632, 2001.
URL : https://hal.archives-ouvertes.fr/hal-02674249

R. Safou-matondo and P. Deleporte, Hybrid and clonal variability of nutrient content and nutrient use efficiency in Eucalyptus stands in Congo, Forest Ecology and Management, vol.210, issue.1-3, pp.193-204, 2005.

P. Vigneron, Création et amélioration des variétés hybrides d'Eucalyptus au Congo, 1991.

, UFRO «Intensive Forestry: the role of Eucalyptus

H. Akaike, Information theory and an extension of the maximum likelihood principle, 2nd International Symposium on Information Theory, 1973.

C. D. Allen and A. K. Macalady, A global overview of drought and heat-induced tree mortality reveals emerging climate change risks for forests, Forest Ecology and Management, vol.259, issue.4, pp.660-684, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00457602

G. B. Bonan, Forests and climate change: forcings, feedbacks, and the climate benefits of forests, Science (Washington), vol.320, issue.5882, pp.1444-1449, 2008.

J. Bouillet and J. Laclau, Changes with age in the spatial distribution of roots of Eucalyptus clone in Congo: Impact on water and nutrient uptake, Forest Ecology and Management, vol.171, issue.1-2, pp.43-57, 2002.
URL : https://hal.archives-ouvertes.fr/hal-02828995

J. M. Bouvet and P. Vigneron, Age trends in variances and heritabilities in Eucalyptus factorial mating designs, Silvae Genetica, vol.44, issue.4, pp.206-216, 1995.

N. Breda and R. Huc, Temperate forest trees and stands under severe drought: a review of ecophysiological responses, adaptation processes and long-term consequences, Annals of Forest Science, vol.63, issue.6, pp.625-644, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02667194

D. Brunet and B. G. Barthès, Determination of carbon and nitrogen contents in Alfisols, Oxisols and Ultisols from Africa and Brazil using NIRS analysis: Effects of sample grinding and set heterogeneity, Geoderma, vol.139, issue.1-2, pp.106-117, 2007.

J. M. Campion and M. Nkosana, Biomass and N and P pools in above-and belowground components of an irrigated and fertilised Eucalyptus grandis stand in South Africa, Australian Forestry, vol.69, issue.1, pp.48-57, 2006.

R. Ceulemans and L. Vanpraet, EFFECTS OF CO2 ENRICHMENT, LEAF POSITION AND CLONE ON STOMATAL INDEX AND EPIDERMAL-CELL DENSITY IN POPLAR (POPULUS), New Phytologist, vol.131, issue.1, pp.99-107, 1995.

M. R. Chambel and J. Climent, Phenotypic plasticity: a useful framework for understanding adaptation in forest species, Investigacion Agraria, Sistemas y Recursos Forestales, vol.14, issue.3, pp.334-344, 2005.

S. Cha-um and C. Kirdmanee, Effects of water stress induced by sodium chloride and mannitol on proline accumulation, photosynthetic abilities and growth characters of eucalyptus (<i>Eucalyptus camaldulensis&lt, New Forests, vol.40, issue.3, p.349, 2010.

M. Christina and J. P. Laclau, Almost symmetrical vertical growth rates above and below ground in one of the world's most productive forests, Ecosphere, vol.2, issue.3, p.27, 2011.

D. Craven and D. Dent, Seasonal variability of photosynthetic characteristics influences growth of eight tropical tree species at two sites with contrasting precipitation in Panama, 2010.

L. Mareschal and J. D. Nzila, Mineralogical and physico-chemical properties of Ferralic Arenosols derived from unconsolidated Plio-Pleistocenic deposits in the coastal plains of Congo, Geoderma, vol.162, issue.1-2, pp.159-170, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02650227

S. Matesanz and E. Gianoli, Global change and the evolution of phenotypic plasticity in plants, Year in Evolutionary Biology, vol.1206, pp.35-55, 2010.

A. T. M&apos;bou and C. Jourdan, Root elongation in tropical Eucalyptus plantations: effect of soil water content, Annals of Forest Science, vol.65, issue.6, pp.609-610, 2008.

A. Merchant and A. Callister, Contrasting physiological responses of six Eucalyptus species to water deficit, Annals of Botany, vol.100, pp.1507-1515, 2007.

R. Monclus and E. Dreyer, Productivity, leaf traits and carbon isotope discrimination in 29 Populus deltoides x P-nigra clones, New Phytologist, vol.167, issue.1, pp.53-62, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02683155

R. Monclus and E. Dreyer, Impact of drought on productivity and water use efficiency in 29 genotypes of Populus deltoides x Populus nigra, New Phytologist, vol.169, issue.4, pp.765-777, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02665985

Y. Nouvellon and J. Laclau, Within-stand and seasonal variations of specific leaf area in a clonal Eucalyptus plantation in the Republic of Congo, Forest Ecology and Management, vol.259, issue.9, pp.1796-1807, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02663854

B. W. Olbrich and D. Leroux, VARIATION IN WATER-USE EFFICIENCY AND DELTA-C-13 LEVELS IN EUCALYPTUS-GRANDIS CLONES, Journal of Hydrology, vol.150, issue.2-4, pp.615-633, 1993.

J. S. Pereira, T. T. Kozlowski, and ;. Seedlings, Canadian Journal of Botany-Revue Canadienne De Botanique, vol.54, issue.24, pp.2868-2880, 1976.

M. Pigliucci, Evolution of phenotypic plasticity: where are we going now?, Trends in Ecology & Evolution, vol.20, issue.9, pp.481-486, 2005.

D. M. Rozendaal and V. H. Hurtado, Plasticity in leaf traits of 38 tropical tree species in response to light; relationships with light demand and adult stature, Functional Ecology, vol.20, issue.2, pp.207-216, 2006.

R. Safou-matondo and P. Deleporte, Hybrid and clonal variability of nutrient content and nutrient use efficiency in Eucalyptus stands in Congo, Forest Ecology and Management, vol.210, issue.1-3, pp.193-204, 2005.

L. Saint-andré and A. T. Bou, Age-related equations for above-and belowground biomass of a Eucalyptus hybrid in Congo, Forest Ecology and Management, vol.205, issue.1-3, pp.199-214, 2005.

J. L. Stape and D. Binkley, The Brazil Eucalyptus Potential Productivity Project: Influence of water, nutrients and stand uniformity on wood production, Forest Ecology and Management, vol.259, issue.9, pp.1684-1694, 2010.

S. E. Sultan, Phenotypic plasticity for plant development, function and life history, Trends in Plant Science, vol.5, issue.12, pp.537-542, 2000.

W. Thuiller and C. Albert, Predicting global change impacts on plant species' distributions: Future challenges, Perspectives in Plant Ecology, Evolution and Systematics, vol.9, issue.3-4, pp.137-152, 2008.
URL : https://hal.archives-ouvertes.fr/halsde-00281677

C. Trouve and A. Mariotti, Soil organic carbon dynamics under Eucalyptus and Pinus planted on savannas in the Congo, Soil Biology and Biochemistry, vol.26, issue.2, pp.287-295, 1994.
URL : https://hal.archives-ouvertes.fr/hal-02704542

F. Valladares and E. Gianoli, Ecological limits to plant phenotypic plasticity, New Phytologist, vol.176, pp.749-763, 2007.

F. Valladares and D. Sanchez-gomez, Quantitative estimation of phenotypic plasticity: bridging the gap between the evolutionary concept and its ecological applications, Journal of Ecology, vol.94, issue.6, pp.1103-1116, 2006.

C. Warren and T. Bleby, Changes in gas exchange versus leaf solutes as a means to cope with summer drought in <i>Eucalyptus marginata</i&gt, Oecologia, vol.154, issue.1, pp.1-10, 2007.

M. J. West-eberhard, Developmental Plasticity and Evolution, 2003.

D. Whitehead and C. L. Beadle, Physiological regulation of productivity and water use in Eucalyptus: a review, Forest Ecology and Management, vol.193, issue.1-2, pp.113-140, 2004.

S. D. Wright and K. D. Mcconnaughay, Interpreting phenotypic plasticity: The importance of ontogeny, Plant Species Biology, vol.17, issue.2-3, pp.119-131, 2002.

I. Wu, A Simple Evapotranspiration Model for Hawaii: The Hargreaves Model, 1997.

E. A. Bacelar and C. M. Correia, Sclerophylly and leaf anatomical traits of five field-grown olive cultivars growing under drought conditions, Tree Physiology, vol.24, issue.2, pp.233-239, 2004.

D. Barthélémy, Levels of organization and repetition phenomena in seed plants, Acta Biotheoretica, vol.39, issue.3, pp.309-323, 1991.

A. M. Bosabalidis and G. Kofidis, Comparative effects of drought stress on leaf anatomy of two olive cultivars, Plant Science, vol.163, issue.2, pp.375-379, 2002.

A. D. Bradshaw and E. W. Thoday, Evolutionary Significance of Phenotypic Plasticity in Plants, Advances in Genetics, vol.13, pp.115-155, 1965.

E. A. Bray, Classification of genes differentially expressed during water-deficit stress in Arabidopsis thaliana: an analysis using Microarray and differential expression data, Annals of Botany, vol.89, pp.803-811, 2002.

J. Buffard-morel and J. L. Verdeil, Somatic Embryogenesis of Coconut-Palms (Cocos-Nucifera-L.) from Leaf Explants -Histology, Canadian Journal of Botany-Revue Canadienne De Botanique, vol.70, issue.4, pp.735-741, 1992.

J. L. Carter and D. A. White, Plasticity in the Huber value contributes to homeostasis in leaf water relations of a mallee Eucalypt with variation to groundwater depth, Tree Physiology, vol.29, issue.11, pp.1407-1418, 2009.

C. M. Caruso and H. Maherali, Plasticity of physiology in Lobelia: Testing for adaptation and constraint, Evolution, vol.60, issue.5, pp.980-990, 2006.

R. Ceulemans and L. Van-praet, Effects of CO2 Enrichment, Leaf Position and Clone on Stomatal Index and Epidermal Cell Density in Poplar (Populus), New Phytologist, vol.131, issue.1, pp.99-107, 1995.

M. Cristescu and D. Anton, Study of leaves structures that determine the resistance to dryness at succulent plants, Journal of Horticulture, Forestry and Biotechnology, vol.14, issue.1, pp.60-64, 2010.

S. Delagrange, Light-and seasonal-induced plasticity in leaf morphology, N partitioning and photosynthetic capacity of two temperate deciduous species, Environmental and Experimental Botany, vol.70, issue.1, pp.1-10, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02648860

J. C. Delwaulle, Clonal Plantations of Hybrid Eucalyptus in the Congo, Bois et Forets des Tropiques, pp.37-42, 1985.

T. J. Dewitt and A. Sih, Costs and limits of phenotypic plasticity, Trends in Ecology & Evolution, vol.13, issue.2, pp.77-81, 1998.

R. A. Dixon and N. L. Paiva, Stress-Induced Phenylpropanoid Metabolism, Plant Cell, vol.7, issue.7, pp.1085-1097, 1995.

G. D. Farquhar and J. R. Ehleringer, Carbon Isotope Discrimination and Photosynthesis, Annual Review of Plant Physiology and Plant Molecular Biology, vol.40, p.503, 1989.

P. J. Franks and P. L. Drake, Plasticity in maximum stomatal conductance constrained by negative correlation between stomatal size and density: an analysis using Eucalyptus globulus, Plant, Cell and Environment, vol.32, issue.12, pp.1737-1748, 2009.

G. Gao and J. Zou, Tissue speciality and stress responses in expression of three WAX2 homologous genes in rice, Acta Agronomica Sinica, vol.36, issue.8, pp.1336-1341, 2010.

S. C. Grace and B. A. Logan, Energy dissipation and radical scavenging by the plant phenylpropanoid pathway, Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, vol.355, pp.1499-1510, 1402.

J. Grimplet and M. D. Wheatley, Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions, Proteomics, vol.9, issue.9, pp.2503-2528, 2009.

N. E. Grulke, Plasticity in physiological traits in conifers: Implications for response to climate change in the western US, Environmental Pollution, vol.158, issue.6, pp.2032-2042, 2010.

F. Halle, Modular Growth in Seed Plants, Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, vol.313, pp.77-87, 1159.

Y. T. Hanba and M. Shibasaka, Overexpression of the barley aquaporin HvPIP2;1 increases internal CO2 conductance and CO2 assimillation in the leaves of transgenic rice plants, Plant and Cell Physiology, vol.45, issue.5, pp.521-529, 2004.

G. Y. Hao and L. Sack, Differentiation of leaf water flux and drought tolerance traits in hemiepiphytic and non-hemiepiphytic Ficus tree species, Functional Ecology, vol.24, issue.4, pp.731-740, 2010.

H. Ishii and E. D. Ford, Variation in specific needle area of old-growth Douglasfir in relation to needle age, within-crown position and epicormic shoot production, Tree Physiology, vol.22, issue.1, pp.31-40, 2002.

N. M. Kleczewski and D. A. Herms, Effects of soil type, fertilization and drought on carbon allocation to root growth and partitioning between secondary metabolism and ectomycorrhizae of Betula papyrifera, Tree Physiology, vol.30, issue.7, pp.807-817, 2010.

D. K. Kosma and B. Bourdenx, The impact of water deficiency on leaf cuticle lipids of Arabidopsis, Plant Physiology, vol.151, issue.4, pp.1918-1929, 2009.

C. H. Lusk and P. B. Reich, Why are evergreen leaves so contrary about shade?, Trends in Ecology & Evolution, vol.23, issue.6, pp.299-303, 2008.

H. Maherali and C. M. Caruso, Adaptive Value and Costs of Physiological Plasticity to Soil Moisture Limitation in Recombinant Inbred Lines of Avena barbata, American Naturalist, vol.175, issue.2, pp.211-224, 2010.

C. Mertz and V. Cheynier, Analysis of phenolic compounds in two blackberry species (Rubus glaucus and Rubus adenotrichus) by high-performance liquid chromatography with diode array detection and electrospray ion trap mass spectrometry, Journal of Agricultural and Food Chemistry, vol.55, pp.8616-8624, 2007.
URL : https://hal.archives-ouvertes.fr/hal-02663774

L. Misson and K. P. Tu, Seasonality of photosynthetic parameters in a multispecific and vertically complex forest ecosystem in the Sierra Nevada of California, Tree Physiology, vol.26, issue.6, pp.729-741, 2006.

B. Nandha and G. Finazzi, The role of PGR5 in the redox poising of photosynthetic electron transport, Biochimica Et Biophysica Acta-Bioenergetics, vol.1767, pp.1252-1259, 2007.

M. R. Ngugi and D. Doley, Leaf water relations of Eucalyptus cloeziana and Eucalyptus argophloia in response to water deficit, Tree Physiology, vol.23, issue.5, pp.335-343, 2003.

Y. Nouvellon and J. P. Laclau, Within-stand and seasonal variations of specific leaf area in a clonal Eucalyptus plantation in the Republic of Congo, Forest Ecology and Management, vol.259, issue.9, pp.1796-1807, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02663854

J. J. Oertli and S. H. Lips, The Strength of Sclerophyllous Cells to Resist Collapse Due to Negative Turgor Pressure, Acta Oecologica-International Journal of Ecology, vol.11, issue.2, pp.281-289, 1990.

O. V. Osipenkova and M. S. Odintsova, The influence of light, hormonal, and carbohydrate signal systems on ELIP gene expression in gun-mutants Arabidopsis thaliana, Applied Biochemistry and Microbiology, vol.46, issue.3, pp.331-338, 2010.

B. Patra and S. Ray, Enhanced salt tolerance of transgenic tobacco plants by coexpression of PcINO1 and McIMT1 is accompanied by increased level of myo-inositol and methylated inositol, Protoplasma, vol.245, issue.1-4, pp.143-152, 2010.

H. Poorter and S. Pepin, Construction costs, chemical composition and payback time of high-and low-irradiance leaves, Journal of Experimental Botany, vol.57, issue.2, pp.355-371, 2006.

C. Ramakers and J. M. Ruijter, Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data, Neuroscience Letters, vol.339, issue.1, pp.62-66, 2003.

J. A. Ramirez-valiente and D. Sanchez-gomez, Phenotypic plasticity and local adaptation in leaf ecophysiological traits of 13 contrasting cork oak populations under different water availabilities, Tree Physiology, vol.30, issue.5, pp.618-627, 2010.

G. E. Rehfeldt and W. R. Wykoff, Physiologic plasticity, evolution, and impacts of a changing climate on Pinus contorta, Climatic Change, vol.50, issue.3, pp.355-376, 2001.

K. E. Reid and N. Olsson, An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development, BMC Plant Biology, vol.6, issue.27, 2006.

M. Riederer and L. Schreiber, Protecting against water loss: analysis of the barrier properties of plant cuticles, Journal of Experimental Botany, vol.52, issue.363, pp.2023-2032, 2001.

S. Rossini and A. P. Casazza, Suppression of both ELIP1 and ELIP2 in Arabidopsis does not affect tolerance to photoinhibition and photooxidative stress, Plant Physiology, vol.141, issue.4, pp.1264-1273, 2006.

S. Rozen and H. Skaletsky, Primer3 on the WWW for general users and for biologist programmers, Methods Mol Biol, vol.132, pp.365-86, 2000.

J. M. Ruijter and C. Ramakers, Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data, Nucleic Acids Research, vol.37, issue.6, 2009.

R. Safou-matondo and P. Delaporte, Hybrid and clonal variability of nutrient content and nutrient use efficiency in Eucalyptus stands in Congo, Forest Ecology and Management, vol.210, issue.1-3, pp.193-204, 2005.

A. Sala and S. Sabate, Canopy Structure within a Quercus-Ilex Forested Watershed -Variations Due to Location, Phenological Development, and Water Availability, Trees-Structure and Function, vol.8, issue.5, pp.254-261, 1994.

L. Sampedro and X. Moreira, Genetics, phosphorus availability, and herbivorederived induction as sources of phenotypic variation of leaf volatile terpenes in a pine species, Journal of Experimental Botany, vol.61, issue.15, pp.4437-4447, 2010.

R. L. Satter and A. W. Galston, Mechanisms of Control of Leaf Movements, Annual Review of Plant Physiology and Plant Molecular Biology, vol.32, pp.83-110, 1981.

C. D. Schlichting and M. Pigliucci, Phenotypic evolution: A reaction norm perspective, p.387, 1998.

M. Sturaro and F. Salamini, Characterization of gl1, a maize gene that affects cuticular wax accumulation, Maize Genetics Cooperation Newsletter, issue.80, pp.2-3, 2006.

S. E. Sultan and H. G. Spencer, Metapopulation structure favors plasticity over local adaptation, American Naturalist, vol.160, issue.2, pp.271-283, 2002.

M. Sultana and T. Asaeda, Morphological plasticity of submerged macrophyte Potamogeton wrightii Morong under different photoperiods and nutrient conditions, Chemistry and Ecology, vol.26, issue.3, pp.223-232, 2010.

F. Valladares and U. Niinemets, Shade Tolerance, a Key Plant Feature of Complex Nature and Consequences, Annual Review of Ecology Evolution and Systematics, vol.39, p.237, 2008.

P. H. Van-tienderen, Evolution of Generalists and Specialists in Spatially Heterogeneous Environments, Evolution, vol.45, issue.6, pp.1317-1331, 1991.

J. Vandesompele and K. D. Preter, , 2002.

E. Villar and C. Klopp, RNA-Seq reveals genotype-specific molecular responses during seasonal water deficit in eucalyptus, 2011.

D. Vincent and C. Lapierre, Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation, Plant Physiology, vol.137, issue.3, pp.949-960, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02675469

Y. Vitasse and C. C. Bresson, Quantifying phenological plasticity to temperature in two temperate tree species, Functional Ecology, vol.24, issue.6, pp.1211-1218, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02664554

L. K. Wang and Z. X. Feng, DEGseq: an R package for identifying differentially expressed genes from RNA-seq data, Bioinformatics, vol.26, issue.1, pp.136-138, 2010.

C. R. Warren and E. Dreyer, Ecotype adaptation and acclimation of leaf traits to rainfall in 29 species of 16-year-old Eucalyptus at two common gardens, Functional Ecology, vol.20, issue.6, pp.929-940, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02666215

B. Weisshaar and G. I. Jenkins, Phenylpropanoid biosynthesis and its regulation, Current Opinion in Plant Biology, vol.1, issue.3, pp.251-257, 1998.

I. J. Wright and P. B. Reich, The worldwide leaf economics spectrum, Nature, vol.428, issue.6985, pp.821-827, 2004.

K. V. Krutovskii and N. Db, Forest genomics for conserving adaptive genetic diversity. Forest Genetic Resources, pp.6-8, 2001.

J. L. Hamrick, Response of forest trees to global environmental changes. Forest Ecology and Management, vol.197, pp.323-335, 2004.

A. S. Jump and J. Penuelas, Running to stand still: adaptation and the response of plants to rapid climate change, Ecology Letters, vol.8, issue.9, pp.1010-1020, 2005.

, Eucalyptus universalis. Global cultivated forests map, 2008.

M. H. Mcgowen, R. Wiltshire, B. M. Potts, and R. E. Vaillancourt, The origin of Eucalyptus vernicosa, a unique shrub eucalypt, Biological Journal of the Linnean Society, vol.74, issue.3, pp.397-405, 2001.

R. C. Jones, D. A. Steane, B. M. Potts, and R. E. Vaillancourt, Microsatellite and morphological analysis of Eucalyptus globulus populations, Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere, vol.32, issue.1, pp.59-66, 2002.

J. E. Holman, J. M. Hughes, and R. J. Fensham, A morphological cline in Eucalyptus: a genetic perspective, Molecular Ecology, vol.12, issue.11, pp.3013-3025, 2003.

V. Tripiana, M. Bourgeois, D. Verhaegen, P. Vigneron, and J. M. Bouvet, Combining microsatellites, growth, and adaptive traits for managing in situ genetic resources of Eucalyptus urophylla, Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere, vol.37, issue.4, pp.773-785, 2007.
URL : https://hal.archives-ouvertes.fr/cirad-00845388

K. G. Payn, W. S. Dvorak, B. Janse, and A. A. Myburg, Microsatellite diversity and genetic structure of the commercially important tropical tree species Eucalyptus urophylla, endemic to seven islands in eastern Indonesia, Tree Genetics & Genomes, vol.4, issue.3, pp.519-530, 2008.

P. A. Butcher and E. R. Williams, Variation in outcrossing rates and growth in Eucalyptus camaldulensis from the Petford Region, Queensland; Evidence of outbreeding depression

, Silvae Genetica, vol.51, issue.1, pp.6-12, 2002.

M. Shepherd, T. R. Sexton, D. Thomas, M. Henson, and R. J. Henry, Geographical and historical determinants of microsatellite variation in Eucalyptus pilularis, Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere, vol.40, issue.6, pp.1051-1063, 2010.

G. E. Mckinnon, B. M. Potts, D. A. Steane, and R. E. Vaillancourt, Population and phylogenetic analysis of the cinnamoyl coA reductase gene in Eucalyptus globulus (Myrtaceae), Australian Journal of Botany, vol.53, issue.8, pp.827-838, 2005.

E. Novaes, D. R. Drost, W. G. Farmerie, G. J. Pappas, D. Grattapaglia et al., High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome, Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways, vol.9, 2008.

, Sultan SE: Phenotypic plasticity for plant development, function and life history, Trends in Plant Science, vol.5, issue.12, pp.537-542, 2000.

J. L. Stape, D. Binkley, and M. G. Ryan, Production and carbon allocation in a clonal Eucalyptus plantation with water and nutrient manipulations. Forest Ecology and Management, vol.255, pp.920-930, 2008.

J. M. Campion, M. Nkosana, and M. C. Scholes, Biomass and N and P pools in above-and below-ground components of an irrigated and fertilised Eucalyptus grandis stand in South Africa, Australian Forestry, vol.69, issue.1, pp.48-57, 2006.

A. Eyles, E. A. Pinkard, and C. Mohammed, Shifts in biomass and resource allocation patterns following defoliation in Eucalyptus globulus growing with varying water and nutrient supplies, Tree Physiology, vol.29, issue.6, pp.753-764, 2009.

S. D. Tatagiba, J. Pezzopane, and R. Efd, Penchel RM: Performance of six clones of eucalyptus in response to substrate water availability. Engenharia na Agricultura, vol.17, pp.179-189, 2009.

A. L. Shvaleva, F. Silva, E. Breia, L. Jouve, J. F. Hausman et al., Metabolic responses to water deficit in two Eucalyptus globulus clones with contrasting drought sensitivity, Tree Physiology, vol.26, issue.2, pp.239-248, 2006.

P. Pita and J. A. Pardos, Growth, leaf morphology, water use and tissue water relations of Eucalyptus globulus clones in response to water deficit, Tree Physiology, vol.21, issue.9, pp.599-607, 2001.

A. Merchant, A. D. Peuke, C. Keitel, C. Macfarlane, C. R. Warren et al., Phloem sap and leaf delta C-13, carbohydrates, and amino acid concentrations in Eucalyptus globulus change systematically according to flooding and water deficit treatment, Journal of Experimental Botany, issue.6, pp.1785-1793, 2010.

A. Tsuchihira, Y. T. Hanba, N. Kato, T. Doi, T. Kawazu et al., Effect of overexpression of radish plasma membrane aquaporins on water-use efficiency, photosynthesis and growth of Eucalyptus trees, Tree Physiology, vol.30, issue.3, pp.417-430, 2010.

A. Harb and A. Pereira, Screening Arabidopsis Genotypes for Drought Stress Resistance, Plant Reverse Genetics: Methods and Protocols, pp.191-198, 2011.

M. K. Deyholos, Making the most of drought and salinity transcriptomics, Plant Cell and Environment, vol.33, issue.4, pp.648-654, 2010.

V. Lefebvre, S. P. Kiani, and M. Durand-tardif, A Focus on Natural Variation for Abiotic Constraints Response in the Model Species Arabidopsis thaliana, International Journal of Molecular Sciences, vol.10, issue.8, pp.3547-3582, 2009.

D. Cohen, M. B. Bogeat-triboulot, E. Tisserant, S. Balzergue, M. L. Martin-magniette et al., Thiec Dl et al: Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes, BMC Genomics, vol.11, issue.630, 2010.

M. Berta, A. Giovannelli, F. Sebastiani, A. Camussi, and M. L. Racchi, Transcriptome changes in the cambial region of poplar (Populus alba L.) in response to water deficit, Plant Biology, vol.12, issue.2, pp.341-354, 2010.

E. T. Hamanishi, S. Raj, O. Wilkins, B. R. Thomas, S. D. Mansfield et al., Intraspecific variation in the Populus balsamifera drought transcriptome, Plant Cell and Environment, vol.33, issue.10, pp.1742-1755, 2010.

J. C. Vera, C. W. Wheat, H. W. Fescemyer, M. J. Frilander, D. L. Crawford et al., Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing, Molecular Ecology, vol.17, issue.7, pp.1636-1647, 2008.

T. T. Torres, M. Metta, B. Ottenwalder, and C. Schlotterer, Gene expression profiling by massively parallel sequencing, Genome Research, vol.18, issue.1, pp.172-177, 2008.

A. Barakat, D. S. Diloreto, Y. Zhang, C. Smith, K. Baier et al., Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection, BMC Plant Biology, vol.9, issue.51, 2009.

F. Alagna, D. &apos;agostino, N. Torchia, L. Servili, M. Rao et al., Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development, BMC Genomics, vol.10, issue.399, 2009.

J. Traas and T. Vernoux, The shoot apical meristem: the dynamics of a stable structure, Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, vol.357, pp.737-747, 1422.

E. Lopez-juez, D. E. Magyar, Z. Khan, S. Hazeldine, S. De-jager et al., Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis, Plant Cell, vol.20, issue.4, pp.947-968, 2008.

G. Keller, T. Marchal, H. Sanclemente, M. Navarro, N. Ladouce et al., Development and functional annotation of an 11,303-EST collection from Eucalyptus for studies of cold tolerance, Tree Genetics & Genomes, vol.5, issue.2, pp.317-327, 2009.

D. Rengel, S. Clemente, H. Servant, F. Ladouce, N. Paux et al., A new genomic resource dedicated to wood formation in Eucalyptus, BMC Plant Biology, vol.9, issue.36, 2009.
URL : https://hal.archives-ouvertes.fr/hal-01565048

D. A. Faria, E. Mamani, M. R. Pappas, G. J. Pappas, and D. Grattapaglia, A Selected Set of EST-Derived Microsatellites, Polymorphic and Transferable across 6 Species of Eucalyptus, Journal of Heredity, vol.101, issue.4, pp.512-520, 2010.

E. Mizrachi, C. A. Hefer, M. Ranik, F. Joubert, and A. A. Myburg, De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

, BMC Genomics, vol.11, issue.681, 2010.

K. E. Reid, N. Olsson, J. Schlosser, F. Peng, and S. T. Lund, An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development, BMC Plant Biology, issue.6, 2006.

M. Margulies, M. Egholm, W. E. Altman, S. Attiya, J. S. Bader et al., Genome sequencing in microfabricated highdensity picolitre reactors, Nature, vol.437, issue.7057, pp.376-380, 2005.

S. Ueno, P. Gl, V. Leger, C. Klopp, C. Noirot et al., Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak, BMC Genomics, vol.11, issue.650, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00645933

G. Pertea, X. Q. Huang, F. Liang, V. Antonescu, R. Sultana et al., TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets, vol.19, pp.651-652, 2003.

L. K. Wang, Z. X. Feng, X. Wang, X. W. Wang, and X. G. Zhang, DEGseq: an R package for identifying differentially expressed genes from RNA-seq data, Bioinformatics, vol.26, issue.1, pp.136-138, 2010.

Y. Benjamini and Y. Hochberg, Controlling the False Discovery Rate -a Practical and Powerful Approach to Multiple Testing, Journal of the Royal Statistical Society Series B-Methodological, vol.57, issue.1, pp.289-300, 1995.

S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, Basic Local Alignment Search Tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990.

S. Gotz, J. M. Garcia-gomez, J. Terol, T. D. Williams, S. H. Nagaraj et al., High-throughput functional annotation and data mining with the Blast2GO suite, Nucleic Acids Research, vol.36, issue.10, pp.3420-3435, 2008.

B. Usadel, F. Poree, A. Nagel, M. Lohse, A. Czedik-eysenberg et al., A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. Plant Cell and Environment, vol.32, issue.9, pp.1211-1229, 2009.

J. C. Vega-arreguin, E. Ibarra-laclette, B. Jimenez-moraila, O. Martinez, J. P. Vielle-calzada et al., Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing, BMC Genomics, vol.10, issue.299, 2009.

D. E. Soltis, P. S. Soltis, M. W. Chase, M. E. Mort, D. C. Albach et al., Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences, Botanical Journal of the Linnean Society, vol.133, issue.4, pp.381-461, 2000.

M. Lynch and J. B. Walsh, Genetics and Analysis of Quantitative Traits, 1998.

R. Ekblom and J. Galindo, Applications of next generation sequencing in molecular ecology of non-model organisms, Heredity, p.aop, 2010.

M. L. Metzker, APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies -the next generation, Nature Reviews Genetics, vol.11, issue.1, pp.31-46, 2010.

D. R. Zerbino and E. Birney, Velvet: Algorithms for de novo short read assembly using de Bruijn graphs, Genome Research, vol.18, issue.5, pp.821-829, 2008.

O. Morozova and M. A. Marra, Applications of next-generation sequencing technologies in functional genomics, Genomics, vol.92, issue.5, pp.255-264, 2008.

X. Zhou, Z. Su, R. D. Sammons, Y. H. Peng, P. J. Tranel et al., Novel software package for cross-platform transcriptome analysis (CPTRA), Bmc Bioinformatics, p.10, 2009.

P. K. Wall, J. Leebens-mack, A. S. Chanderbali, A. Barakat, E. Wolcott et al., Comparison of next generation sequencing technologies for transcriptome characterization, BMC Genomics, vol.10, issue.347, 2009.

M. Nowrousian, Next-Generation Sequencing Techniques for Eukaryotic Microorganisms: Sequencing-Based Solutions to Biological Problems, Eukaryotic Cell, vol.2010, issue.9, pp.1300-1310

M. J. Hegarty, G. L. Barker, A. C. Brennan, K. J. Edwards, R. J. Abbott et al., Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio, Philosophical Transactions of the Royal Society B-Biological Sciences, vol.363, pp.3055-3069, 1506.

S. A. Pavey, H. Collin, P. Nosil, and S. M. Rogers, The role of gene expression in ecological speciation, Year in Evolutionary Biology, vol.1206, pp.110-129, 2010.

B. M. Potts and H. S. Dungey, Interspecific hybridization of <i>Eucalyptus</i>: key issues for breeders and geneticists, New Forests, vol.27, issue.2, pp.115-138, 2004.

K. Shinozaki and K. Yamaguchi-shinozaki, Gene networks involved in drought stress response and tolerance, Journal of Experimental Botany, vol.58, issue.2, pp.221-227, 2007.

E. A. Bray, Plant responses to water deficit, Trends in Plant Science, vol.1997, issue.2, pp.48-54

N. Beaudoin, C. Serizet, F. Gosti, and J. Giraudat, Interactions between abscisic acid and ethylene signaling cascades, Plant Cell, vol.12, issue.7, pp.1103-1115, 2000.
URL : https://hal.archives-ouvertes.fr/hal-00161002

R. E. Sharp and M. E. Lenoble, ABA, ethylene and the control of shoot and root growth under water stress, Journal of Experimental Botany, vol.53, issue.366, pp.33-37, 2002.

A. S. Voisin, B. Reidy, B. Parent, G. Rolland, E. Redondo et al., Are ABA, ethylene or their interaction involved in the response of leaf growth to soil water deficit? An analysis using naturally occurring variation or genetic transformation of ABA production in maize, Plant Cell and Environment, vol.29, issue.9, pp.1829-1840, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02666199

S. Hong-bo, C. Li-ye, M. , and S. , Calcium as a versatile plant signal transducer under soil water stress, Bioessays, vol.30, issue.7, pp.634-641, 2008.

J. I. Schroeder, J. M. Kwak, and G. J. Allen, Guard cell abscisic acid signalling and engineering drought hardiness in plants, Nature, vol.410, issue.6826, pp.327-330, 2001.

C. Hutin, L. Nussaume, M. N. Moya, I. Kloppstech, K. Havaux et al., Early lightinduced proteins protect arabidopsis from photooxidative stress, Proceedings of the National Academy of Sciences of the United States of America, vol.100, pp.4921-4926, 2003.

J. L. Martindale and N. J. Holbrook, Cellular response to oxidative stress: Signaling for suicide and survival, Journal of Cellular Physiology, vol.192, issue.1, pp.1-15, 2002.

S. Kitajima and F. Sato, Plant pathogenesis-related proteins: Molecular mechanisms of gene expression and protein function, Journal of Biochemistry, vol.125, issue.1, pp.1-8, 1999.

B. R. Lee, W. J. Jung, B. H. Lee, J. C. Avice, A. Ourry et al., Kinetics of drought-induced pathogenesis-related proteins and its physiological significance in white clover leaves, Physiologia Plantarum, vol.132, issue.3, pp.329-337, 2008.
URL : https://hal.archives-ouvertes.fr/hal-02663824

R. Przymusinski, R. Rucinska, and E. A. Gwozdz, Increased accumulation of pathogenesisrelated proteins in response of lupine roots to various abiotic stresses, Environmental and Experimental Botany, vol.52, issue.1, pp.53-61, 2004.

C. Dubos, R. Stracke, E. Grotewold, B. Weisshaar, C. Martin et al., MYB transcription factors in Arabidopsis, Trends in Plant Science, vol.15, issue.10, pp.573-581, 2010.
URL : https://hal.archives-ouvertes.fr/hal-01203945

K. Yamaguchi, Y. Takahashi, T. Berberich, A. Imai, T. Takahashi et al., A protective role for the polyamine spermine against drought stress in Arabidopsis. Biochemical and Biophysical Research Communications, vol.352, pp.486-490, 2007.

C. R. Warren, T. Bleby, and M. A. Adams, Changes in gas exchange versus leaf solutes as a means to cope with summer drought in Eucalyptus marginata, Oecologia, vol.154, pp.1-10, 2007.

M. Hajheidari, A. Eivazi, B. B. Buchanan, J. H. Wong, I. Majidi et al., Proteomics uncovers a role for redox in drought tolerance in wheat, Journal of Proteome Research, vol.6, issue.4, pp.1451-1460, 2007.

E. Alexandersson, L. Fraysse, S. Sjovall-larsen, S. Gustavsson, M. Fellert et al., Whole gene family expression and drought stress regulation of aquaporins, Plant Molecular Biology, vol.59, issue.3, pp.469-484, 2005.

C. R. Landry, J. Oh, D. L. Hartl, and D. Cavalieri, Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes, Gene, vol.366, issue.2, pp.343-351, 2006.

A. Hodgins-davis and J. P. Townsend, Evolving gene expression: from G to E to G x E, Trends in Ecology & Evolution, vol.24, issue.12, pp.649-658, 2009.

V. Chinnusamy and J. Zhu, Epigenetic regulation of stress responses in plants, Current Opinion in Plant Biology, vol.12, issue.2, pp.133-139, 2009.

E. Mazzucotelli, A. M. Mastrangelo, C. Crosatti, D. Guerra, A. M. Stanca et al., Abiotic stress response in plants: When post-transcriptional and post-translational regulations control transcription, Plant Science, vol.174, issue.4, pp.420-431, 2008.

E. A. Bray, Molecular Responses to Water-Deficit, Plant Physiology, vol.103, issue.4, pp.1035-1040, 1993.

M. Arend and J. Fromm, Seasonal change in the drought response of wood cell development in poplar, Tree Physiology, vol.27, pp.985-992, 2007.

H. Awad, T. Barigah, E. Badel, H. Cochard, and S. Herbette, Poplar vulnerability to xylem cavitation acclimates to drier soil conditions, Physiologia Plantarum, vol.139, pp.280-288, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00964705

N. Bahrman, C. Plomion, R. J. Petit, and A. Kremer, Contribution to maritime pine genetics using proteins revealed by two-dimensional electrophoresis, Annals of Forest Science, vol.54, pp.225-236, 1997.

H. Barsnes, J. A. Vizcaino, I. Eidhammer, and L. Martens, PRIDE Converter: making proteomics data-sharing easy, Nature Biotechnology, vol.27, pp.598-599, 2009.

D. Bartels and R. Sunkar, Drought and Salt Tolerance in Plants, Critical Reviews in Plant Sciences, vol.24, pp.23-58, 2005.

F. Bedon, J. Majada, I. Feito, P. Chaumeil, J. Dupuy et al., Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.), Plant Physiology and Biochemistry, vol.49, pp.69-76, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02647579

Y. Benjamini and Y. Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of Royal Statistical Society B, vol.57, pp.289-300, 1995.

M. B. Bogeat-triboulot, M. Brosché, and J. Renaut, Gradual soil water depletion results in reversible changes of gene expression, protein profiles, ecophysiology, and growth performance in Populus euphratica, a poplar growing in arid regions, Plant Physiology, vol.143, pp.876-892, 2007.
URL : https://hal.archives-ouvertes.fr/hal-02658086

D. J. Boland, M. I. Brooker, G. M. Chippendale, N. Hall, B. P. Hyland et al., , 2006.

L. Bonhomme, R. Monclus, D. Vincent, S. Carpin, S. Claverol et al., Genetic variation and drought response in two Populus x euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants, Phytochemistry, vol.70, pp.988-1002, 2009.
URL : https://hal.archives-ouvertes.fr/hal-02656637

L. Bonhomme, R. Monclus, D. Vincent, S. Carpin, A. M. Lomenech et al.,

&. Morabito and D. , Leaf proteome analysis of eight Populus x euramericana genotypes: genetic variation in drought response and in water-use efficiency involves photosynthesisrelated proteins, Proteomics, vol.17, pp.4121-4142, 2009.

R. Ceulemans, L. Van-praet, and X. N. Jiang, Effects of CO2 enrichment, leaf position and clone on stomatal index and epidermal cell density in poplar (Populus), New Phytologist, vol.131, pp.99-107, 1995.

M. M. Chaves, J. P. Maroco, and J. S. Pereira, Understanding plant response to droughtfrom genes to the whole plant, Functional Plant Biology, vol.30, pp.239-264, 2003.

K. Cornish, J. W. Radin, E. L. Turcotte, Z. Lu, and E. Zieger, Enhanced photosynthesis and stomatal conductance of Pima cotton (Gossypium barbadense L.) bred for increased yield, Plant Physiology, vol.97, pp.484-489, 1991.

C. Damerval, D. De-vienne, M. Zivy, and H. Thiellement, Technical improvements in two-dimensional gel electrophoresis increase the level of genetic variation detected in wheatseedling proteins, Electrophoresis, vol.7, pp.52-54, 1986.

J. C. Delwaulle, Point des recherches sur le choix des clones dix ans apres les premieres plantations, Proceedings of the IUFRO Meeting on Genetic Improvement of Tropical Trees, p.4, 1988.

G. D. Farquhar and T. D. Sharkey, Stomatal conductance and photosynthesis, Annual Review of Plant Physiology, vol.33, pp.317-345, 1982.

J. M. Gion, C. Lalanne, L. Provost, and G. , The proteome of maritime pine wood forming tissue, Proteomics, vol.14, pp.3731-3751, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02678286

C. W. Gruber, M. Cemazar, B. Heras, J. L. Martin, and D. J. Craik, Protein disulfide isomerase: the structure of oxidative folding, Trends in Biochemical Sciences, vol.31, pp.455-464, 2006.

X. Guo, X. Zhang, and Z. Huang, Drought tolerance in three hybrid poplar clones submitted to different watering regimes, Journal of Plant Ecology, vol.3, pp.79-87, 2010.

C. He, J. Zhang, A. Duan, S. Zheng, H. Sun et al., Proteins responding to drought and high-temperature stress in Populus x euramericana cv, Trees, vol.22, pp.803-813, 2008.

C. Hernandez-blanco, D. X. Feng, and J. Hu, , 2007.

J. K. Hong and B. K. Hwang, Induction by pathogen, salt and drought of a basic class II chitinase mRNA and its in situ localization in pepper (Capsicum annuum), Physiologia Plantarum, vol.114, pp.549-558, 2002.

G. T. Iglesias and D. Wistermann, Eucalyptus universalis. Global cultivated Eucalyptus forest map. Eucalyptologics: Information on Eucalyptus cultivation worlwide. GIT Forestry Consulting, 2008.

S. Ipcc, ;. S. For-policymakers, D. Solomon, M. Qin, Z. Manning et al., Climate Change 2007: The physical science basis, Contribution of working group I to the fourth assessment report of the intergovernmental panel on climate change, 2007.

N. A. Karp and K. S. Lilley, Investigating sample pooling strategies for DIGE experiments to address biological variability, Proteomics, vol.9, pp.388-397, 2009.

R. C. Kellison, Present and future uses of eucalyptus wood in the world, Proceedings of the IUFRO International Symposium Developing the eucalypt of the future, 2001.

K. Kohzuma, J. A. Cruz, K. Akashi, S. Hoshiyasui, Y. N. Munekage et al., The long-term responses of the photosynthetic proton circuit to drought, Plant, Cell and Environment, vol.32, pp.209-219, 2009.

J. P. Laclau, J. P. Bouillet, and J. Ranger, Dynamics of biomass and nutrient accumulation in a clonal plantation of Eucalyptus in Congo, Forest Ecology and Management, vol.128, pp.181-196, 2000.
URL : https://hal.archives-ouvertes.fr/hal-02690869

D. Lawlor and W. Tezara, Causes of decreased photosynthetic rate and metabolic capacity in water-deficient leaf cells: a critical evaluation of mechanisms and integration of processes, Annals of Botany, vol.103, pp.561-579, 2009.

J. Lecoeur, J. Wery, O. Turc, and F. Tardieu, Expansion of pea leaves subjected to short water-deficit: cell number and cell-size are sensitive to stress at different periods of leaf development, Journal of Experimental Botany, vol.46, pp.1093-1101, 1995.
URL : https://hal.archives-ouvertes.fr/hal-02701978

C. Li and K. Wang, Differences in drought responses of three contrasting Eucalyptus microtheca F, Muell. Populations. Forest Ecology and Management, vol.179, pp.377-385, 2003.

C. Li, Some aspects of leaf water relations in four provenances of Eucalyptus microtheca seedlings, Forest Ecology and Management, vol.111, pp.303-308, 1998.

C. Li, F. Berninger, J. Koskela, and E. Sonninen, , 2000.

Z. Liang, J. Yang, H. Shao, and R. Han, Investigation on water consumption characteristics and water use efficiency of poplar under soil water deficits on the Loess Plateau, Colloids and Surfaces B: Biointerfaces, vol.53, pp.23-28, 2006.

D. H. Lundgren, S. I. Hwang, L. Wu, and D. K. Han, Role of spectral counting in quantitative proteomics, Expert Review of Proteomics, vol.1, pp.39-53, 2010.

L. Martens, H. Hermjakob, P. Jones, M. Adamski, C. Taylor et al., PRIDE: the proteomics identifications database, Proteomics, vol.5, pp.3537-3545, 2005.

A. Martinez-meier, L. Sanchez, M. Pastorino, L. Gallo, and P. Rozenberg, What is hot in tree rings? The wood density of surviving Douglas-firs to the 2003 drought and heat wave, Forest Ecology and Management, vol.256, pp.837-843, 2008.
URL : https://hal.archives-ouvertes.fr/hal-02663742

S. Matesanz, E. Gianoli, and F. Valladares, Global change and the evolution of phenotypic plasticity in plants, Annals of the New York Academy of Sciences, vol.1206, pp.35-55, 2010.

V. Mechin, T. Balliau, S. Chateau-joubert, M. Davanture, O. Langella et al., A two-dimensional proteome map of maize endosperm, Phytochemistry, vol.65, pp.1609-1618, 2004.
URL : https://hal.archives-ouvertes.fr/hal-02675725

M. Mencuccini and J. Comstock, Variability in hydraulic architecture and gaz exchange of common bean (Phaesolus vulgaris) cultivars under well-watered conditions: interactions with leaf size, Australian Journal of Plant Physiology, vol.26, pp.115-124, 1999.

A. Merchant, A. Callister, S. Arndt, M. Tausz, and M. Adams, Contrasting physiological responses of six Eucalyptus species to water deficit, Annals of Botany, vol.100, pp.1507-1515, 2007.

A. Merchant, A. D. Peuke, C. Keitel, C. Macfarlane, C. R. Warren et al., Phloem sap and leaf delta13C, carbohydrates, and amino acid concentrations in Eucalyptus globulus change systematically according to flooding and water deficit treatment, Journal of Experimental Botany, vol.61, pp.1785-1793, 2010.

G. Miller, N. Suzuki, S. Ciftici-yilmaz, and R. Mittler, Reactive oxygen species homeostasis and signalling during drought and salinity stresses, Plant, Cell and Environment, vol.33, pp.453-467, 2010.

R. Monclus, E. Dreyer, M. Villar, F. M. Delmotte, D. Delay et al., Impact of drought on productivity and water use efficiency in 29 genotypes of Populus deltoides x Populus nigra, New Phytologist, vol.169, pp.765-777, 2007.
URL : https://hal.archives-ouvertes.fr/hal-02665985

M. R. Ngugi, D. Doley, M. A. Hunt, P. Dart, and P. Ryan, Leaf water relations of Eucalyptus cloeziana and Eucalyptus argophloia in response to water deficit, Tree Physiology, vol.23, pp.335-343, 2003.

E. Novaes, D. R. Drost, W. G. Farmerie, G. J. Pappas, D. Grattapaglia et al.,

M. Kirst, High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome, BMC Genomics, vol.9, p.312, 2008.

C. Pinheiro, M. M. Chaves, and C. P. Ricardo, Alterations in carbon and nitrogen metabolism induced by water deficit in the stems and leaves of Lupinus albus L, Journal of Experimental Botany, vol.52, pp.1063-1070, 2001.

P. Pita and J. A. Pardos, Growth, leaf morphology, water and tissue water relations of Eucalyptus globulus clones in response to water deficit, Tree Physiology, vol.21, pp.599-607, 2001.

P. Pita, A. Gascó, and J. A. Pardos, Xylem cavitation, leaf growth and leaf water potential in Eucalyptus globulus clones under well-watered and drought conditions, Functional Plant Biology, vol.30, pp.891-899, 2003.

C. Plomion, C. Lalanne, and S. Claverol, Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins, Proteomics, vol.6, pp.6509-6527, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02663888

L. D. Pryor, E. R. Williams, and B. V. Gunn, A Morphometric Analysis of Eucalyptus urophylla and Related Taxa with Descriptions of Two New Species, Australian Systematic Botany, vol.8, pp.57-70, 1995.

, R: A language and environment for statistical computing. R Foundation for Statistical Computing, 2008.

L. S. Ramagli and L. V. Rodriguez, Quantitation of micrograms amounts of proteins in two-dimensional polyacrylamide gel electrophoresis, Electrophoresis, vol.6, pp.559-563, 1985.

R. Safou-matondo, P. Deleporte, J. P. Laclau, and J. P. Bouillet, Hybrid and clonal variability of nutrient content and nutrient use efficiency in Eucalyptus stands in Congo, Forest Ecology and Management, vol.210, pp.193-204, 2005.

L. Saint-andre, A. T. Bou, A. Mabiala, W. Mouvondy, C. Jourdan et al., Age-related equations for above-and below-ground biomass of a Eucalyptus hybrid in Congo, Forest Ecology and Management, vol.205, pp.199-214, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02680204

E. Schulze, N. C. Turner, D. Nicolle, and J. Schumacher, Leaf and wood carbon isotope ratios, specific leaf areas and wood growth of Eucalyptus species across a rainfall gradient in Australia, Tree Physiology, vol.26, pp.479-492, 2006.

H. B. Shao, L. Y. Chu, C. A. Jalleel, and C. X. Zhao, Water-deficit stress-induced anatomical changes in higher plants, Comptes Rendus Biologies, vol.331, pp.215-225, 2008.

F. Sparla, G. Tedeschi, P. Pupillo, and P. Trost, Cloning and heterologous expression of NAD(P)H:quinone reductase of Arabidopsis thaliana, a functional homologue of animal DTdiaphorase, FEBS Letters, vol.463, pp.382-386, 1999.

R. L. Specht, The Australian Environment, pp.44-67, 1970.

A. M. Timperio, M. G. Egidi, and L. Zolla, Proteomics applied on plant abiotic stresses: role of heat shock proteins (HSP), Journal of Proteomics, vol.71, pp.391-411, 2008.

S. Torabi, M. Wissuwa, M. Heidari, M. Naghavi, K. Gilany et al., A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency, Proteomics, vol.9, pp.159-170, 2009.

C. Trouvé, A. Mariotti, D. Schwartz, and B. Guillet, Soil organic carbon dynamics under Eucalyptus and Pinus planted on savannas in the Congo, Soil Biology and Biochemistry, vol.26, pp.287-295, 1994.

K. Tuomela, Leaf water relations in six provenances of Eucalyptus microtheca: a greenhouse experiment, Forest Ecology and Management, vol.92, pp.1-10, 1997.

K. Tuomela, J. Koskela, and A. Gibson, Relationship between growth, specific leaf area and water use in six populations of Eucalyptus microtheca seedlings from two climates grown in controlled conditions, Australian Forestry, vol.64, pp.75-79, 2001.

N. C. Turner, Adaptation to water deficits: a changing perspective, Australian Journal of Plant Physiology, vol.13, pp.175-190, 1986.

I. Ulitsky, A. Maron-katz, S. Shavit, D. Sagir, C. Linhart et al., Expander: from expression microarrays to networks and functions, Nature Protocols, vol.5, pp.303-322, 2010.

R. Urade, Cellular response to unfolded proteins in the endoplasmic reticulum of plants, FEBS Journal, vol.274, pp.1152-1171, 2007.

M. A. Valente, J. A. Faria, and J. R. Soares-ramos, The ER luminal binding protein (BiP) mediates an increase in drought tolerance in soybean and delays droughtinduced leaf senescence in soybean and tobacco, Journal of Experimental Botany, vol.60, pp.533-546, 2008.

D. Vincent, M. Balesdent, and J. Gibon, Hunting Down Fungal Secretomes using Liquid-Phase IEF Prior to High Resolution 2-DE, Electrophoresis, vol.30, pp.4118-4136, 2009.
URL : https://hal.archives-ouvertes.fr/hal-02656973

D. Vincent, A. Ergül, and M. C. Bohlman, Proteomic analysis reveals differences between Vitis vinifera L. cv. Chardonnay and cv. Cabernet Sauvignon and their responses to water deficit and salinity, Journal of Experimental Botany, vol.58, pp.1873-1892, 2007.

D. Vincent, C. Lapierre, B. Pollet, .. G. Cornic, L. Negroni et al., Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation, Plant Physiology, vol.137, pp.949-960, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02675469

D. Wang, E. P. Bachelard, and C. G. Banks, Growth and water relations of two subspecies of Eucalyptus globulus, Tree Physiology, vol.4, pp.129-138, 1988.

E. A. Weretilnyk, K. J. Alexander, M. Drebenstedt, J. D. Snider, P. S. Summers et al., Maintaining methylation activities during salt stress. The involvement of adenosine kinase, Plant Physiology, vol.125, pp.856-865, 2001.

J. Westbrook, J. Yan, R. Wait, S. Welson, and M. Dunn, Zooming-in on the proteome: very narrow-range inmobilised pH gradients reveal more protein species and isoforms, Electrophoresis, vol.22, pp.2865-2871, 2001.

D. A. White, C. L. Beadle, and D. Worledge, Leaf water relations of Eucalyptus globulus ssp. Globulus and E. nitens: seasonal, drought and species effects, Tree Physiology, vol.16, pp.469-476, 1996.

D. A. White, N. C. Turner, and J. H. Galbraith, Leaf water relations and stomatal behaviour of four allopatric Eucalyptus species planted in Mediterranean southwestern Australia, Tree Physiology, vol.20, pp.1157-1165, 2000.

D. Whitehead and C. L. Beadle, Physiological regulation of productivity and water use in Eucalyptus: a review, Forest Ecology and Management, vol.193, pp.113-140, 2004.

R. Wightman and S. R. Turner, The roles of the cytoskeleton during cellulose deposition at the secondary cell wall, Plant Journal, vol.54, pp.794-805, 2008.

A. Wingler, P. J. Lea, W. P. Quick, and R. C. Leegood, Photorespiration: metabolic pathways and their role in stress protection, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.355, pp.1517-1529, 2000.

Y. Wu and D. J. Cosgrove, Adaptation of roots to low water potentials by changes in cell wall extensibility and cell wall proteins, Journal of Experimental Botany, vol.51, pp.1543-1553, 2000.

X. Xiao, F. Yang, S. Zhang, H. Korpelainen, and C. Li, Physiological and proteomic responses of two contrasting Populus cathayana populations to drought stress, Physiologia Plantarum, vol.136, pp.150-168, 2009.

F. Yang, Y. Wang, and . L. Miao, , 2010.

Y. Yang, T. W. Thannhauser, L. Li, and S. Zhang, Development of an integrated approach for evaluation of 2-D gel image analysis: impact of multiple proteins in single spots on comparative proteomics in conventional 2-D gel/MALDI workflow, Electrophoresis, vol.12, pp.2080-2094, 2007.

S. Zhou, R. Sauve, and T. W. Thannhauser, Proteome changes induced by aluminium stress in tomato roots, Journal of Experimental Botany, vol.60, pp.1849-1857, 2009.

W. Zhu, J. Venable, C. S. Giometti, T. Khare, S. Tollaksen et al.,

L. Large-scale and . Ms, Coomassie blue-stained polyacrylamide gels, Electrophoresis, vol.26, pp.4495-4507, 2009.

B. Boyle, N. Dallaire, and J. Mackay, , 2009.

S. Chang, J. Puryear, and J. Cairney, A simple and efficient method for isolating RNA from Pine Trees, Plant Molecular Biology Reporter, vol.11, pp.113-116, 1993.

S. P. Gygi, Y. Rochon, B. R. Franza, and R. Aebersold, Correlation between protein and mRNA abundance in yeast, Molecular and Cellular Biology, vol.19, pp.1720-1730, 1999.

N. Nicot, J. Hausman, L. Hoffmann, and D. Evers, Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress, Journal of Experimental Botany, vol.56, pp.2907-2914, 2005.

E. Novaes, D. R. Drost, W. G. Farmerie, G. J. Pappas, D. Grattapaglia et al.,

M. Kirst, High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome, BMC Genomics, vol.9, p.312, 2008.

C. Ramakers, J. M. Ruijter, R. H. Deprez, and A. F. Moorman, Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data, Neuroscience Letters, vol.339, p.62, 2003.

S. Rozen and H. Skaletsky, Primer3 on the WWW for general users and for biologist programmers, Methods Molecular Biology, vol.132, pp.365-86, 2000.

J. M. Ruijter, C. Ramakers, W. M. Hoogaars, Y. Karlen, O. Bakker et al.,

A. F. Moorman, Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data, Nucleic Acids Research, vol.37, p.45, 2009.

. Hamilton,

, Sur chaque plaque, les ADNc étaient répliqués 4 fois, Science

. Ramakers, Les courbes d'amplification ont été traitées avec le logiciel LinRegPCR

. Ruijter, afin de soustraire les lignes de base, calculer les efficacités individuelles (Eff ind ), et déterminer le cycle seuil (Ct) et le seuil de fluorescence à Ct (F), 2009.

. Nicot, Ensuite, les concentrations à l'origine ont été calculées à partir de la formule suivante : le génotype, 2005.

. Vandesompele, , 2002.

. Xu, Pour chaque enzyme, sont indiqués, les e-value seuil pour la recherche d'homologie de séquence, ainsi que le domaine recherché. Le nombre de séquences homologues dans la banque (colonne I),le nombre de contigs portant le domaine protéique d'interêt (colonne II), ainsi que le nombre de contig restant après élimination des variants allèliques et issus d'épissage alternatif (colonne III) sont comparées avec les données publiées par, Tableau 2 -Résultats de la recherche de 10 gènes de la voie de biosynthèse des lignines dans les banques de séquences 454 d'apex d'eucalyptus, 2009.

R. Bibliographiques,

M. J. Antal and S. G. Allen, Attainment of the theoretical yield of carbon from biomass, Industrial & Engineering Chemistry Research, vol.39, issue.11, pp.4024-4031, 2000.

M. Baucher and C. Halpin, Lignin: Genetic engineering and impact on pulping, Critical Reviews in Biochemistry and Molecular Biology, vol.38, issue.4, pp.305-350, 2003.

M. Berta and A. Giovannelli, Transcriptome changes in the cambial region of poplar (Populus alba L.) in response to water deficit, Plant Biology, vol.12, issue.2, pp.341-354, 2010.

W. Boerjan and J. Ralph, Lignin biosynthesis, Annual Review of Plant Biology, vol.54, pp.519-546, 2003.
URL : https://hal.archives-ouvertes.fr/hal-02766568

M. M. Campbell and R. R. Sederoff, Variation in lignin content and composition, 1996.

P. Chaumeil, Plasticité moléculaire de deux écotypes de pin maritime soumis à un stress osmotique, 2006.

R. A. Dixon and M. S. Srinivasa-reddy, Biosynthesis of monolignols. Genomic and reverse genetic approaches, Phytochemistry Reviews, vol.2, issue.3, pp.289-306, 2003.

C. Foucart and A. Jauneau, Overexpression of EgROP1, a Eucalyptus vascularexpressed Rac-like small GTPase, affects secondary xylem formation in Arabidopsis thaliana, New Phytologist, vol.183, issue.4, pp.1014-1029, 2009.
URL : https://hal.archives-ouvertes.fr/hal-01565047

J. M. Gion and P. Rech, Mapping candidate genes in Eucalyptus with emphasis on lignification genes, Molecular Breeding, vol.6, issue.5, pp.441-449, 2000.
URL : https://hal.archives-ouvertes.fr/hal-02697368

M. Goicoechea and E. Lacombe, EgMYB2, a new transcriptional activator from Eucalyptus xylem, regulates secondary cell wall formation and lignin biosynthesis, Plant Journal, vol.43, issue.4, pp.553-567, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00086212

Y. Hu and W. C. Li, Differential expression of candidate genes for lignin biosynthesis under drought stress in maize leaves, Journal of Applied Genetics, vol.50, issue.3, pp.213-223, 2009.

S. Hunter and R. Apweiler, InterPro: the integrative protein signature database, Nucleic Acids Research, vol.37, pp.211-215, 2009.
URL : https://hal.archives-ouvertes.fr/hal-01214141

D. G. Kim and Y. J. Kim, Effect of wounding and chemical treatments on expression of the gene encoding cinnamate-4-hydroxylase in Camptotheca acuminata leaves, Journal of Plant Biology, vol.48, issue.3, pp.298-303, 2005.

C. Kulheim and S. H. Yeoh, Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways, Bmc Genomics, vol.10, 2009.

V. Lauvergeat and C. Lacomme, Two cinnamoyl-CoA reductase (CCR) genes from Arabidopsis thaliana are differentially expressed during development and in response to infection with pathogenic bacteria, Phytochemistry, vol.57, issue.7, pp.1187-1195, 2001.

S. Legay and E. Lacombe, Molecular characterization of EgMYB1, a putative transcriptional repressor of the lignin biosynthetic pathway, Plant Science, vol.173, pp.542-549, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00275898

E. Mandrou, Variabilité fonctionnelle de gènes candidats de la lignification chez l'eucalyptus, 2010.

J. Moura and C. A. Bonine, Abiotic and Biotic Stresses and Changes in the Lignin Content and Composition in Plants, Journal of Integrative Plant Biology, vol.52, issue.4, pp.360-376, 2010.

A. A. Myburg and B. M. Potts, Eucalypts. Genome Mapping and Molecular Breeding in Plants, Forest Trees. C. Kole, vol.7, pp.115-160, 2007.

N. Nicot and J. F. Hausman, Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress, Journal of Experimental Botany, vol.56, issue.421, pp.2907-2914, 2005.

S. A. Pavey and H. Collin, The role of gene expression in ecological speciation, Annals of the New York Academy of Sciences, vol.1206, issue.1, pp.110-129, 2010.

C. Ramakers and J. M. Ruijter, Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data, Neuroscience Letters, vol.339, issue.1, pp.62-66, 2003.

K. E. Reid and N. Olsson, An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development, BMC Plant Biology, vol.6, issue.27, 2006.

S. Rozen and H. Skaletsky, Primer3 on the WWW for general users and for biologist programmers, Methods Mol Biol, vol.132, pp.365-86, 2000.

J. M. Ruijter and C. Ramakers, Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data, Nucleic Acids Research, vol.37, issue.6, 2009.

R. A. Savidge, Biochemistry of seasonal cambial growth and wood formation -an overview of the challenges, Cell and Molecular Biology of Wood Formation, pp.1-30, 2000.

R. Shi and Y. H. Sun, Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes, Plant and Cell Physiology, vol.51, issue.1, pp.144-163, 2010.

B. R. Thumma and M. R. Nolan, Polymorphisms in cinnamoyl CoA reductase (CCR) are associated with variation in microfibril angle in Eucalyptus spp, Genetics, vol.171, issue.3, pp.1257-1265, 2005.

B. R. Thumma and S. G. Southerton, Quantitative trait locus (QTL) analysis of wood quality traits in Eucalyptus nitens, Tree Genetics & Genomes, vol.6, issue.2, pp.305-317, 2010.

J. Vandesompele and K. D. Preter, , 2002.

D. Vincent and C. Lapierre, Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation, Plant Physiology, vol.137, issue.3, pp.949-960, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02675469

L. K. Wang and Z. X. Feng, DEGseq: an R package for identifying differentially expressed genes from RNA-seq data, Bioinformatics, vol.26, issue.1, pp.136-138, 2009.

Z. Y. Xu and D. D. Zhang, Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom, BMC Bioinformatics, vol.10, 2009.

J. M. References-bibliographiques-campion and M. Nkosana, Biomass and N and P pools in above-and belowground components of an irrigated and fertilised Eucalyptus grandis stand in South Africa, Australian Forestry, vol.69, issue.1, pp.48-57, 2006.

M. M. Chaves and J. P. Maroco, Understanding plant responses to drought -from genes to the whole plant, Functional Plant Biology, vol.30, issue.3, pp.239-264, 2003.

M. Christina and J. P. Laclau, Almost symmetrical vertical growth rates above and below ground in one of the world's most productive forests, Ecosphere, vol.2, issue.3, p.27, 2011.

P. L. Drake and D. S. Mendham, A comparison of growth, photosynthetic capacity and water stress in Eucalyptus globulus coppice regrowth and seedlings during early development, Tree Physiology, vol.29, issue.5, pp.663-674, 2009.

J. M. Gion and P. Rech, Mapping candidate genes in Eucalyptus with emphasis on lignification genes, Molecular Breeding, vol.6, issue.5, pp.441-449, 2000.
URL : https://hal.archives-ouvertes.fr/hal-02697368

U. Hacke and J. J. Sauter, Drought-induced xylem dysfunction in petioles, branches, and roots of Populus balsamifera L and Alnus glutinosa (L) Gaertn, Plant Physiology, vol.111, issue.2, pp.413-417, 1996.

J. M. Limousin, Vulnérabilité du chêne vert (Quercus ilex L.) à une augmentation de la sécheresse: Quels ajustements fonctionnels?, 2009.

E. Mandrou, Variabilité fonctionnelle de gènes candidats de la lignification chez l'eucalyptus, 2010.

D. Maurice, Etude exploratoire de la variabilité génétique de morphologie foliaire, de l'état nutritionnel et hydrique chez l'eucalyptus : effet sur la croissance, Agrocampus Ouest, 2010.

R. Monclus and E. Dreyer, Productivity, leaf traits and carbon isotope discrimination in 29 Populus deltoides x P-nigra clones, New Phytologist, vol.167, issue.1, pp.53-62, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02683155

R. C. Muchow and T. R. Sinclair, Epidermal Conductance, Stomatal Density and Stomatal Size among Genotypes of Sorghum-Bicolor (L) Moench, Plant Cell and Environment, vol.12, issue.4, pp.425-431, 1989.

D. C. Nepstad and P. Moutinho, The effects of partial throughfall exclusion on canopy processes, aboveground production, and biogeochemistry of an Amazon forest, Journal of Geophysical Research-Atmospheres, vol.107, 2002.

J. Osorio and M. L. Osorio, Effects of water deficits on ¹³C discrimination and transpiration efficiency of <i>Eucalyptus globulus</i> clones, Functional Plant Biology, vol.25, issue.6, pp.645-653, 1998.

M. Riederer and L. Schreiber, Protecting against water loss: analysis of the barrier properties of plant cuticles, Journal of Experimental Botany, vol.52, issue.363, pp.2023-2032, 2001.

J. L. Stape and D. Binkley, The Brazil Eucalyptus Potential Productivity Project: Influence of water, nutrients and stand uniformity on wood production, Forest Ecology and Management, vol.259, issue.9, pp.1684-1694, 2010.