, ou de mélanges de souches) de B. cinerea sous pression sélective, (i) l'évolution du nombre de noyaux, (ii) l'existence et la dynamique des réarrangements chromosomiques (altération du nombre de chromosomes, du nombre de copies de gènes) et extrachromosomiques (présence, charge et type d'ARN doubles brins en particulier), (iii) les modification génomiques (présence et dynamique de mutations adaptatives) et (iv) les changements dans l'expression de certains gènes d'intérêt (par l'Europe dans le cadre du programme Marie Curie (FP7-PEOPLE-IOF) en 2010 et 2011 en collaboration avec le département d'écologie et de biologie évolutive de l'université de
Microorganisms isolated from the water phase of tropospheric clouds at the Puy de Dôme: major groups and growth abilities at low temperatures, FEMS Microbiolology Ecology, vol.59, pp.242-254, 2007. ,
, Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea, vol.7, p.1002230, 2011.
URL : https://hal.archives-ouvertes.fr/hal-01190236
Long-term monitoring for resistance of Botryotinia fuckeliana to anilinopyrimidine, phenylpyrrole, and hydroxyanilide fungicides in Switzerland, Plant Disease, vol.87, pp.662-666, 2003. ,
Taxonomy and genetic variation of Botrytis and Botryotinia, Botrytis: biology, pathology and control, pp.29-52, 2004. ,
A double-stranded RNA mycovirus confers hypovirulence-associated traits to Botrytis cinerea, FEMS Microbiology Letters, vol.228, pp.87-91, 2003. ,
An assessment of stabilizing selection in crop variety development, Annual Review of Phytopathology, vol.15, pp.185-202, 1977. ,
Evolution of an osmosensing histidine kinase in field strains of Botryotinia fuckeliana (Botrytis cinerea) in response to dicarboximide fungicide usage, Phytopathology, vol.94, pp.1129-1135, 2004. ,
An osmosensing histidine kinase mediates dicarboximide fungicide resistance in Botryotinia fuckeliana (Botrytis cinerea), Fungal Genetics and Biology, vol.36, pp.187-198, 2002. ,
Impact of fungal drug transporters on fungicide sensitivity, multidrug resistance and virulence, Pest Management Science, vol.62, pp.195-207, 2006. ,
Protection of stem wounds against Botrytis cinerea in heated tomato greenhouses with a strain of Fusarium sp, Bulletin OILB/SROP, vol.22, pp.53-56, 1999. ,
URL : https://hal.archives-ouvertes.fr/hal-02695783
Micro-organismes contre agents pathogènes, Phytoma-La Défense des végétaux, vol.549, pp.32-36, 2002. ,
Pathogen self-defense: mechanisms to counteract microbial antagonism, Annual Review of Phytopathology, vol.41, pp.501-538, 2003. ,
Microbial control of Botrytis spp, Botrytis: Biology, Pathology and Control, pp.223-241, 2004. ,
Botrytis spp. and diseases they cause in agricultural systems -an introduction, Botrytis: biology, pathology and control, pp.1-8, 2004. ,
Isolation, characterization, and genetic analysis of laboratory mutants of Botryotinia fuckeliana resistant to the phenylpyrrole fungicide CGA 173506, Mycological Research, vol.97, pp.620-624, 1993. ,
Sympatric genetic differentiation of a generalist pathogenic fungus, Botrytis cinerea, on two different host plants, grapevine and bramble, Journal of Evolutionary Biology, vol.21, pp.122-132, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-02333203
Partition of the Botrytis cinerea complex in France using multiple gene genealogies, Mycologia, vol.97, pp.1251-1267, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02679817
Characterization of nine polymorphic microsatellite loci in the fungus Botrytis cinerea (Ascomycota), Molecular Ecology Notes, vol.2, pp.253-255, 2002. ,
URL : https://hal.archives-ouvertes.fr/hal-02676802
Commercialization and implementation of biocontrol, Annual Review of Phytopathology, vol.43, pp.337-359, 2005. ,
Comparative resistance patterns of fludioxonil and vinclozolin in Botryotinia fuckeliana, Journal of Phytopathology, vol.143, pp.423-428, 1995. ,
The powdery mildews, a comprehensive treatise, pp.249-255, 2002. ,
The ecology of Botrytis on plant surfaces, Botrytis: biology, pathology and control, pp.9-27, 2004. ,
Genotypic diversity and migration of clonal lineages of Botrytis cinerea from chickpea fields of Bangladesh inferred by microsatellite markers, Plant Pathology, vol.57, pp.967-973, 2008. ,
Biological control of plant diseases by phyllosphere applied biological control agents, Microbial ecology of aerial plant surfaces, pp.133-147, 2006. ,
Characterizing the mechanism of biological control of postharvest diseases on fruits with a simple method to study competition for nutrients, Phytopathology, vol.90, pp.1196-1200, 2000. ,
Botryotinia and Botrytis species: taxonomy, physiology, and pathogenicity. A guide to the literature, Canada Department of Agriculture, 1977. ,
Epidemiology, The Biology of Botrytis, pp.219-250, 1980. ,
Geography, plants, and growing systems shape the genetic structure of Tunisian Botrytis cinerea populations, Phytopathology, vol.98, pp.1271-1279, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-02666903
Fungicide-driven evolution and molecular basis of multidrug resistance in field populations of the grey mould fungus Botrytis cinerea, Plos Pathogens, vol.5, p.1000696, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02668014
Sensitivity of populations of Botrytis cinerea from pear-related sources to benzimidazole and dicarboximide fungicides, Plant Disease, vol.87, pp.645-649, 2003. ,
Selection in heterogeneous populations of Puccinia graminis f. sp. avenae, Phytopathology, vol.59, pp.1851-1857, 1969. ,
Chemical control of Botrytis and its resistance to chemical fungicides, Botrytis: Biology, Pathology and Control, pp.195-222, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-02833599
Development of resistance in Botryotinia fuckeliana (de Barry) Whetzel against the biological control agent Bacillus subtilis CL27, Zeitschrift für Pflanzenkrankheiten und Pflanzenschutz, vol.101, pp.414-418, 1994. ,
The HOG1-like MAP kinase Sak1 of Botrytis cinerea is negatively regulated by the upstream histidine kinase Bos1 and is not involved in dicarboximide-and phenylpyrroleresistance, Fungal Genetics and Biology, vol.45, pp.1062-1074, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-02665901
Differential regulation by ambient pH of putative virulence factor secretion by the phytopathogenic fungus Botrytis cinerea, Fems Microbiology Ecology, vol.43, pp.359-366, 2003. ,
Phenazine antibiotics produced by fluorescent pseudomonads contribute to natural soil suppressiveness to Fusarium wilt, The ISME Journal, vol.3, pp.977-991, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02666329
Variation in sensitivity of Gaeumannomyces graminis to antibiotics produced by fluorescent Pseudomonas spp. and effect on biological control of takeall of wheat, Applied and Environmental Microbiology, vol.61, pp.2554-2559, 1995. ,
Baseline sensitivity of Botrytis cinerea to pyraclostrobin and boscalid and control of anilinopyrimidine-and benzimidazole-resistant strains by these fungicides, Plant Disease, vol.92, pp.1427-1431, 2008. ,
Stratégie climatique et lutte intégrée contre les maladies cryptogamiques des cultures sous serre, Actes du séminaire de l, AIP Serres, pp.232-241, 1996. ,
Optical filters against grey mould of greenhouse crops, Physical Control Methods in Plant Protection, pp.134-145, 2001. ,
URL : https://hal.archives-ouvertes.fr/hal-02833339
Biological control in greenhouse systems, Annual Review of Phytopathology, vol.39, pp.103-133, 2001. ,
The ABC transporter BcatrB affects the sensitivity of Botrytis cinerea to the phytoalexin resveratrol and the fungicide fenpiclonil, Molecular Plant-Microbe Interactions, vol.14, pp.562-571, 2001. ,
Fungal ABC transporters and microbial interactions in natural environments, Molecular Plant-Microbe Interactions, vol.15, pp.1165-1172, 2002. ,
Reducing the cost of resistance; experimental evolution in the filamentous fungus Aspergillus nidulans, Journal of Evolutionary Biology, vol.19, pp.1115-1127, 2006. ,
Defense responses of Fusarium oxysporum to 2,4-diacetylphloroglucinol, a broad-spectrum antibiotic produced by Pseudomonas fluorescens, Molecular Plant-Microbe Interactions, vol.17, pp.1201-1211, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-02680974
Involvement of the ABC transporter BcAtrB and the laccase BcLCC2 in defence of Botrytis cinerea against the broad-spectrum antibiotic 2,4-diacetylphloroglucinol, Environmental Microbiology, vol.10, pp.1145-1157, 2008. ,
Molecular phylogeny of the plant pathogenic genus Botrytis and the evolution of host specificity, Molecular Biology and Evolution, vol.22, pp.333-346, 2005. ,
Sexual recombination in the Botrytis cinerea populations in Hungarian vineyards, Phytopathology, vol.98, pp.1312-1319, 2008. ,
A class III histidine kinase acts as a novel virulence factor in Botrytis cinerea, Molecular Plant-Microbe Interactions, vol.19, pp.1042-1050, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02665840
Genetic analysis of resistance to the phenylpyrrole fludioxonil and the dicarboximide vinclozolin in Botryotinia fuckeliana (Botrytis cinerea), Mycological Research, vol.106, pp.329-335, 2002. ,
Competition between aggressive and non-aggressive strains of Botrytis cinerea (Botryotinia fuckeliana) on French bean leaves, Australasian Plant Pathology, vol.29, pp.200-204, 2000. ,
Hypovirulence and double-stranded RNA in Botrytis cinerea, Phytopathology, vol.97, pp.1590-1599, 2007. ,
Effect of phenylpyrrole-resistance mutations on ecological fitness of Botrytis cinerea and their genetical basis in Ustilago maydis, European Journal of Plant Pathology, vol.113, pp.83-100, 2005. ,
, Annexe: quelques publications