, see table below for full data set) ),.Dim=c(49,11), 2000.
, see table below for full data set) ),.Dim=c(216,11), 2000.
, see table below for full data set) ),.Dim=c(38,11), 2000.
,
,
, Adults
, Spawners
, Redds
,
, Adults
,
,
, Estimating the number of spawners for each geo units between, 1959.
, p.cut<-cut(L.mu.p) tau.p.cut<-cut(tau.p) for
URL : https://hal.archives-ouvertes.fr/hal-02447941
,
,
,
, ~ dgamma(alpha.fin.cut, beta.fin.cut)I(0.001,) lambda.redds.old[y,2] <-Spawners
,
,
, ~ dgamma(alpha.roe.cut, beta.roe.cut)I(0.001,) lambda.redds
,
,
,
,
,
,
, J
, PFA
, A
,
, S
,
, J
,
, PFA
,
,
, J
, A
,
,
,
,
, J
, PFA
,
,
,
, J
, PFA
,
,
,
,
, J
, PFA
, A
, S
,
,
, J
, PFA
,
,
,
, J
, PFA
, A
,
,
,
,
, J
, PFA
,
,
,
,
, J
, PFA
,
,
,
, J
, PFA
, A
, S
,
,
, J
, PFA
,
,
,
, J
, PFA
, A
,
,
,
,
, J
, PFA
,
,
,
,
, J
, PFA
,
,
,
,
,
, J
, PFA
, A
, S
,
,
, J
, PFA
,
,
,
,
, J
, PFA
, A
,
,
,
,
, J
, PFA
,
,
,
, J
, # dynamic link between J and returns # We need to set another set of loops because we dont have pseudo observation for year 51(2009) yet for, vol.50
, PFA
,
,
,
,
, J
, PFA
, A
, S
,
, J
,
,
,
, J
, PFA
,
,
,
, J
, PFA
,
,
,
, PFA) geo units # row: years, columns: geo units cv, J
, S.inits = structure(.Data = c, p.10000, 10000.
, Understanding the significance of redd counts: A comparison between two methods for estimating the abundance of and monitoring bull trout populations, North American Journal of Fisheries Management, vol.25, pp.1505-1512, 2005.
, The application of science to the management of Atlantic salmon (Salmo salar): integration across scales, Canadian Journal of Fisheries and Aquatic Sciences, vol.55, pp.303-312, 1998.
, Habitat requirements of Atlantic salmon and brown trout in rivers and streams, Fisheries Research, vol.62, pp.143-170, 2003.
, Temporal and spatial variation in growth of juvenile Atlantic salmon, Journal of Fish Biology, vol.68, pp.1062-1076, 2006.
, Microdistribution of Populations of Brown Trout (Salmo trutta L) and of Juvenile Atlantic Salmon (Salmo salar L) and Other Species Present in the Upstream Part of the Scorff River (Brittany), Hydrobiologia, vol.120, pp.229-239, 1985.
, The variability among populations of coho salmon in the maximum reproductive rate and depensation, Ecological Applications, vol.13, pp.784-793, 2003.
, Evaluating single-pass catch as a tool for identifying spatial pattern in fish distribution, Journal of Freshwater Ecology, vol.20, pp.335-345, 2005.
, The relation between redd counts and Atlantic salmon (Salmo salar) parr populations in the Dennys River, Maine. Canadian Journal of Fisheries and Aquatic Sciences, vol.53, pp.513-519, 1996.
, Statistical decision theory and Bayesian analysis, 2 nd ed, 1985.
, Bayesian theory, Series in probability and mathematical statistics, vol.586, p.pp, 1994.
, Statistiques pour l'environnement. Traitement Bayesien de l'incertitude. Editions Tech. et Doc, vol.363, p.pp, 2000.
, On the dynamics of exploited fish populations, pp.1-533, 1957.
, A responsible approach to marine stock enhancement, Am Fish Soc Symp, vol.15, pp.167-175, 1995.
, Electrofishing -Theory and Practice with Special Emphasis on Salmonids, Hydrobiologia, vol.173, pp.9-43, 1989.
, Electric Fishing for sampling and stock assessment, Fishing with Electricity, pp.112-139, 1990.
, Implications of unequal probability of capture by electric fishing on the estimation of population size, Developments in electric fishing, pp.145-155, 1990.
, Interobserver and temporal bull trout redd count variability in tributaries of Lake Pend Oreille, Idaho: Completion Report. Department of Fisheries and Wildlife, 1997.
, Diversity of Atlantic salmon (Salmo salar L.) in Northern Ireland. The Queen's University of Belfast, 2003.
, Bayesian inference in statistical analysis, p.588, 1992.
, Time series analysis, forecasting and control, vol.3, 1994.
, The influence of broad scale climatic phenoma on long terms trends in Atlantic salmon population size: an example from the River Foyle, Journal of Fish Biology, vol.68, pp.276-283, 2006.
, General methods for monitoring convergence of iterative simulations, Journal of Computational and Graphical Statistics, vol.7, pp.434-455, 1998.
, Densitydependent habitat selection by juvenile Atlantic salmon (Salmo salar) in experimental riverine habitats, Canadian Journal of Fisheries and Aquatic Sciences, vol.56, pp.1298-1306, 1999.
, Reference points for fisheries management. FAO fisheries technical paper, 1995.
, Targets or limits for management of Fisheries ?, North American Journal of Fisheries Management, vol.16, pp.479-487, 1996.
, Incorporating multiple sources of stochasticity into dynamic population models, Ecology, vol.84, pp.1395-1402, 2003.
, A Monte Carlo approach to nonnormal and nonlinear state-space modeling, Journal of the American Statistical Association, vol.87, pp.493-500, 1992.
, Theory and models in ecology: a different perspective, Ecological Modelling, vol.43, pp.33-44, 1988.
,
, Stock status of Atlantic salmon (Salmo salar) in the Miramichi River. DFO Canadian Science Advisory Secreteriat Research Document, p.8, 2001.
, Model uncertainty, data mining and statistical inference, Journal of the Royal Statistical Society, Series A, vol.158, pp.419-466, 1995.
, The analysis of time series, an introduction, 5 th ed, 1996.
, Monte Carlo methods in Bayesian computation, 2000.
, Seed dispersal near and far: Patterns across temperate and tropical forests, Ecology, vol.80, pp.1475-1494, 1999.
, Uncertainty and variability in demography and population growth: A hierarchical approach, Ecology, vol.84, pp.1370-1381, 2003.
, Estimating population spread: What can we forecast and how well?, Ecology, vol.84, pp.1979-1988, 2003.
, Coexistence: How to identify trophic trade-offs, Ecology, vol.84, pp.17-31, 2003.
, Population time series: Process variability, observation errors, missing values, lags, and hidden states, Ecology, vol.85, pp.3140-3150, 2004.
, Why environmental scientists are becoming Bayesians, Ecology Letters, vol.8, pp.2-14, 2005.
, Hierarchical modelling for the environmental sciences: statistical methods and applications, 2006.
, Models for ecological data, 2007.
, Bayesian statistical modelling, 2001.
, Hierarchical model building, fitting, and checking: a behind the scenes look at a Bayesian analysis of arsenic exposure pathways, Bayesian analysis, vol.4, pp.1-36, 2009.
, Trout and salmon: ecology, conservation and rehabilitation Fishing News Books, p.212, 2000.
, Observations on siting, dimensions and structure of salmonid redds, Journal of Fish Biology, vol.34, pp.119-134, 1989.
, Problems with timed electric fishing assessment methods, Fisheries Management and Ecology, vol.13, pp.211-212, 2006.
, Salmon research on the river Bush. Irish rivers: Biology and Management, pp.29-46, 1991.
, Application of semi-quantitative electrofishing to juvenile salmonid stock surveys, Journal of Fish Biology, vol.45, pp.159-164, 1994.
, Application of a fry (0+) abundance index, based on semi-quantitative electrofishing, to predict Atlantic salmon smolt runs in the River Bush, Journal of Fish Biology, vol.47, pp.107-114, 1995.
, SALMODEL -A Coordinated Approach Towards the Development of a Scientific Basis for Management of Wild Atlantic Salmon in the, 2003.
, A Bayesian approach to estimating Atlantic salmon fry densities using a rapid sampling technique, Fisheries Management and Ecology, vol.16, pp.399-408, 2009.
URL : https://hal.archives-ouvertes.fr/hal-02659452
, The NAO: the dominant atmospheric process affecting oceanic variability in home, middle and distant waters of European Atlantic salmon, The Ocean Life of Atlantic Salmon: Environmental and Biological Factors Influencing Survival, pp.92-115, 2000.
, Bayesian inference and decision theory -A framework for decision making in natural resource management, Ecological Applications, vol.13, pp.556-563, 2003.
, Improving Removal-Based Estimates of Abundance by Sampling a Population of Spatially Distinct Subpopulations, Biometrics, vol.61, pp.1093-1101, 2005.
, A research agenda for assessment and propagation of model uncertainty, 1987.
, Variability of demographic parameters and population dynamics of Atlantic salmon (Salmo salar L.) in a southwest French river, ICES Journal of Marine Science, vol.60, pp.356-370, 2003.
URL : https://hal.archives-ouvertes.fr/hal-02669270
, Sources and magnitude of sampling error in redd counts for bull trout, North American Journal of Fisheries Management, vol.21, pp.343-352, 2001.
, An Assessment of the Performance of A Resistivity Fish Counter, Journal of Fish Biology, vol.20, pp.717-737, 1982.
, Factors Governing the Production of Juvenile Atlantic Salmon in Scottish Streams, Journal of Fish Biology, vol.27, pp.27-33, 1985.
, Population structure of the Atlantic salmon (Salmo salar L.) populations, and genetic stock identification of the fisheries, 2008.
, The relative role of density in the stock -recruitment relationship of salmonids. In Assessment and management of Atlantic salmon, pp.25-55, 2001.
, An introduction to bayesian inference for ecological research and environmental decision-making, Ecological Applications, vol.6, pp.1036-1046, 1996.
, Bayesian inference in ecology, Ecology Letters, vol.7, pp.509-520, 2004.
, The Foyle fisheries: new bases for rational management. Foyle Fisheries Commission, vol.228, 1975.
, Population Viability of the Snake River Chinook Salmon (Oncorhynchus tshawytscha), Canadian Journal of Fisheries and Aquatic Sciences, vol.52, pp.1442-1448, 1995.
, Population structure of the Atlantic salmon (Salmo salar L.) populations, and genetic stock identification of the fisheries, the Foyle system. Final report to Loughs Agency, 2008.
, Automatic Salmon Counting Technologies -a Contemporary Review, 1994.
, Validation tests of predictive models of butterfly occurrence based on environmental variables, Conservation Biology, vol.17, pp.806-817, 2003.
, Demographic stochasticity and the variance reduction effect, Ecology, vol.83, pp.1928-1934, 2002.
, Foyle Fisheries 1953. Foyle fisheries annual report for 1953
, Foyle Fisheries 1955. Foyle fisheries annual report for 1955
, Foyle Fisheries 1956. Foyle fisheries annual report for, 1956.
, Foyle Fisheries 1958. Foyle fisheries annual report for 1958
, Foyle Fisheries 1959. Foyle fisheries annual report for 1959
, Foyle Fisheries 1962. Foyle fisheries annual report for, 1962.
, Foyle fisheries annual report for, 1963.
, Foyle fisheries annual report for 1966, Londonderry. References Francis, R.I.C.C. & Shotton, R. 1997, Canadian Journal of Fisheries and Aquatic Sciences, vol.54, pp.1699-1715, 1966.
, Choosing fisheries harvest policies: When does uncertainty matter?, Canadian Journal of Fisheries and Aquatic Sciences, vol.52, pp.291-306, 1995.
, Marine survival of North American and European Atlantic salmon: effects of growth and environment, ICES Journal of Marine Science, vol.50, pp.481-492, 1993.
, Ocean climate influences on critical Atlantic salmon (Salmo salar) life history events, Canadian Journal of Fisheries and Aquatic Sciences, vol.55, pp.119-130, 1998.
, Multidecadal trends in North American Atlantic salmon (Salmo salar) stocks and climate trends relevant to juvenile survival, Canadian Journal of Fisheries and Aquatic Sciences, vol.60, pp.563-583, 2003.
, Bayesian population dynamics of interacting species: great gerbils and fleas in Kazakhastan, Biometrics, vol.61, pp.230-238, 2005.
, Measurement error models, 1987.
, Discrimination of Chinook salmon, Coho Salmon, and steelhead redds and evaluation of the use of redd data for estimating escapement in several unregulated streams in northern California, North American Journal of Fisheries Management, vol.25, pp.284-300, 2005.
, Posterior predictive assessment of model fitness via realized discrepancies, Statistica Sinica, vol.6, pp.733-760, 1996.
, Bayesian Data Analysis, 2004.
, press. Bayes, Jeffreys, prior distributions on the philosophy of statistics
, Ecology , statistics and the art of misdiagnosis: the need for a paradigm shift, Environment reviews, vol.7, pp.167-190, 1999.
, The Atlantic Salmon in Fresh-Water -Spawning, Rearing and Production, Reviews in Fish Biology and Fisheries, vol.3, pp.39-73, 1993.
, The effects of fluvial processes and habitat heterogeneity on distribution, growth and densities of juvenile Atlantic salmon (Salmo salar L.), with consequences on abundance of the adult fish, Ecology of Freshwater Fish, vol.11, pp.207-222, 2002.
, Introducing Markov chain Monte Carlo, pp.1-19, 1996.
, Master's thesis. The Queen's University of Belfast, vol.128, 1972.
, Lognormality in ecological time series, Oikos, vol.99, pp.518-530, 2002.
, Oceanic Migration in Homing Atlantic Salmon, Animal Behaviour, vol.45, pp.927-941, 1993.
, The marine phase of the Atlantic salmon (Salmo salar) life cycle, with comparisons to Pacific salmon, Canadian Journal of Fisheries and Aquatic Sciences, vol.55, pp.104-118, 1998.
, The ocean life of Atlantic salmon. Environmental and biological factors influencing survival. Fishing New Books, pp.75-87, 2000.
, Coping with uncertainty in ecological advice: lessons from fisheries, Trends in Ecology & Evolution, vol.18, pp.617-622, 2003.
, Sandeels, salmon smolts, seabirds, seals and sea fisheries, Salmon Net, vol.27, pp.33-40, 1996.
, The relationship between redd counts and the numbers of spawning salmon in the Girnock burn, Journal du Conseil, vol.43, pp.146-148, 1987.
, Spatial niche variability for young Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) in heterogeneous streams, Ecology of Freshwater Fish, vol.8, pp.1-21, 1999.
, Assessment of salmon stocks and the use of management targets; a case study of the River Tamar, England. Fisheries Management and Ecology, vol.14, pp.7-19, 2007.
, Current trends in including risk an uncertainty in stock assessment and harvest decisions, Canadian Journal of Fisheries and Aquatic Sciences, vol.50, pp.872-880, 1993.
, The ecological detective: confronting models with data, Monographs in population biology 28, 1997.
, Statistical hypothesis testing and decision theory in fisheries science, Fisheries, vol.22, pp.19-20, 1997.
, The economic performance of marine stock enhancement projects, Bulletin of Marine Science, vol.62, pp.661-674, 1998.
, Risk analysis for salmon spawning reference levels. Stock, Recruitment and Reference Points -Assessment and Management of Atlantic Salmon, pp.177-193, 2001.
, Uncertainty, policy analysis and statistics, Statistical Science, vol.2, pp.259-291, 1987.
, Life history variation and growth rate thresholds for maturity in Atlantic salmon, Salmo salar, Canadian Journal of Fisheries and Aquatic Sciences, vol.55, pp.22-47, 1998.
, Report of the study group on the precautionary approach to fisheries management, CM, p.10, 1993.
, , vol.282, p.6, 2009.
, The effect of food abundance on territory size and population density of juvenile steelhead trout (Oncorhynchus mykiss), Oecologia, vol.138, pp.371-378, 2004.
, Age effects on diel activity patterns of juvenile Atlantic salmon: parr are more nocturnal than young-of-the-year, Journal of Fish Biology, vol.64, pp.1731-1736, 2004.
, Temporal variation in synchrony among chinook salmon (Oncorhynchus tshawytscha) redd counts from a References wilderness area in central Idaho, Canadian Journal of Fisheries and Aquatic Sciences, vol.60, pp.840-848, 2003.
, Effects of population density on individual growth of brown trout in streams, Ecology, vol.80, pp.941-956, 1999.
, The relative role of density-dependent and density-independent survival in the life cycle of atlantic salmon Salmo salar, Journal of Animal Ecology, vol.67, pp.751-762, 1998.
, Size and age of maturity of Atlantic salmon correlate with the North Atlantic Oscillation Index (NAOI), Journal of Fish Biology, vol.64, pp.241-247, 2004.
, Factors affecting marine production of Atlantic salmon (Salmo salar), Canadian Journal of Fisheries and Aquatic Sciences, vol.61, pp.2369-2383, 2004.
, Long-term changes in the smolt size and age of Atlantic salmon, Salmo salar L., in a northern Baltic river related to parr density, growth opportunity and postsmolt survival, Ecology of Freshwater Fish, vol.15, pp.321-330, 2006.
, Association between environmental factors, smolt size and the survival of wild and reared Atlantic salmon from the Simojoki River in the Baltic Sea, Journal of Fish Biology, vol.65, pp.122-134, 2004.
, Fisheries biology, assessment and management. Fishing news book, 1995.
, Juvenile Atlantic salmon (Salmo salar) production and prediction. In: Production of juvenile Atlantic salmon, Salmo salar, in natural waters, Canadian Special Publication of Fisheries and Aquatic Sciences, vol.118, pp.179-187, 1993.
, Factors affecting recruitment success in salmonids, The ecological basis for river management, 1995.
, Atlantic salmon Salmo salar L., brown trout Salmo trutta L. and Arctic charr Salvelinus alpinus (L.): a review of aspects of their life histories, Ecology of Freshwater Fish, vol.12, pp.1-59, 2003.
, Single-pass electrofishing predicts trout abundance in mountain streams with sparse habitat, North American Journal of Fisheries Management, vol.18, pp.940-946, 1998.
, BayesX. Software for Bayesian inference based on Markov Chain Monte Carlo simulation techniques. Version 0.6, 2002.
, Spatial Autocorrelation -Trouble Or New Paradigm, Ecology, vol.74, pp.1659-1673, 1993.
, A Simple-Model to Determine Stream Trout (Salmo trutta L) Densities Based on One Removal with Electrofishing, Fisheries Research, vol.15, pp.369-378, 1993.
, River Faughan & tributaries catchment status report, Loughs Agency, 2009.
, River Finn & tributaries catchment status report, Loughs Agency, 2009.
, River Roe & tributaries catchment status report, Loughs Agency, 2009.
, Uncertainty, resource exploitation, and conservation: Lessons from history, Science, vol.260, pp.36-37, 1993.
, Relationships Between Common Biological Reference Points Used As Thresholds and Targets of Fisheries Management Strategies, Canadian Journal of Fisheries and Aquatic Sciences, vol.51, pp.110-122, 1994.
, Keys to the freshwater fishe of Britain and Ireland, FBA Publication No 62, pp. -248pp. The Ferry House, Far Sawrey: FBA, 2004.
, Bayes offers a 'new' way to make sense of numbers, Science, vol.286, pp.1460-1464, 1999.
, The Theoretical Biologist's Toolbox. Quantitative Methods for Ecology and Evolutionary Biology, 2006.
, Bayesian mark-recapture estimation with an application to a salmonid smolt population, Canadian Journal of Fisheries and Aquatic Sciences, vol.59, pp.1748-1758, 2002.
, Bayesian removal estimation of a population size under unequal catchability, Canadian Journal of Fisheries and Aquatic Sciences, vol.62, pp.291-300, 2005.
, Formulating quantitative methods to evaluate fishery-management systems: What fishery processes References should be modelled and what trade-offs should be made?, ICES Journal of Marine Science, vol.56, pp.900-916, 1999.
, Movement, migration, and smolting of Atlantic salmon (Salmo salar), Canadian Journal of Fisheries and Aquatic Sciences, vol.55, pp.77-92, 1998.
, Recent events concerning Atlantic salmon escapees in the Pacific, ICES Journal of Marine Science, vol.54, pp.1221-1225, 1997.
, Atlantic salmon in the North Pacific, Aquaculture Research, vol.28, pp.145-157, 1997.
, Combining multiple Bayesian data analyses in a sequential framework for quantitative fisheries stock assessment, Canadian Journal of Fisheries and Aquatic Sciences, vol.65, pp.962-974, 2008.
, Salmon and trout: a resource, its ecology, conservation and management, 1971.
, , pp.351-1971
, The ecology and management of Atlantic salmon, 1989.
, The natural control of salmon and trout populations in streams, Fisheries Research, vol.62, pp.111-125, 2003.
, , 2006.
, egg size and early hatchery survival for wild Atlantic salmon, from the River Bush, Fisheries Management and Ecology, vol.13, pp.73-79
, Stock enhancement as a fisheries management tool, Reviews in Fish Biology and Fisheries, vol.13, pp.409-432, 2003.
, Observer error structure in bull trout redd counts in Montana streams: Implications for inference on true redd numbers, Transactions of the American Fisheries Society, vol.135, pp.643-654, 2006.
, Summary of worldwide spawner and recruitment data, Can Tech Rep Fish Aquat Sci, 1995.
, Reducing uncertainty in the biological basis of fisheries management by meta-analysis of data from many populations: a synthesis, Fisheries Research, vol.37, pp.51-60, 1998.
, North Atlantic Salmon Conservation Organisation. Plan of action for the application of the precautionary approach to the protection and restoration of Atlantic salmon habitat, p.51, 2001.
, Monte Carlo inference for state-space models of wild animal populations, Biometrics, vol.65, pp.572-583, 2009.
, Is juvenile salmon abundance related to subsequent and preceding catches? Perspectives from a long-term monitoring programme, ICES Journal of Marine Science, vol.62, pp.1617-1629, 2005.
, Instructuctions for using FirstBayes. Version 1.3. University of Sheffield, 1996.
, Bayesian analysis of metapopulation data, Ecology, vol.83, pp.2408-2415, 2002.
, Toward A Definition of Conservation Principles for Fisheries Management, Canadian Journal of Fisheries and Aquatic Sciences, vol.52, pp.1584-1594, 1995.
, Why aren't there more Atlantic salmon (Salmo salar)?, Canadian Journal of Fisheries and Aquatic Sciences, vol.55, pp.281-287, 1998.
, Possible solutions to some challenges facing fisheries scientists and managers, ICES Journal of Marine Science, vol.61, pp.1331-1343, 2004.
, Uncertainty and the management of multistate ecosystems: An apparently rational route to collapse, Ecology, vol.84, pp.1403-1411, 2003.
, An evaluation of multipass electrofishing for estimating the abundance of stream-dwelling salmonids, Transactions of the American Fisheries Society, vol.133, pp.462-475, 2004.
, Emergence of Atlantic salmon fry from gravels of varying composition: a laboratory study. 1020. 1981. Canadian technical report of fisheries and aquatic sciences, 1981.
, The ocean life of Atlantic salmon. Environmental and biological factors influencing survival. Fishing New Books, pp.19-36, 2000.
, Past and present use of reference points for Atlantic salmon, pp.195-223, 2001.
, Modeling the dynamics of smolt production in Atlantic salmon, Transactions of the American Fisheries Society, vol.123, pp.535-548, 1994.
, Relationship between abundance indices of CPUE type and density estimates by the removal method for Atlantic salmon (Salmo salar L.) young of the year. Bulletin Francais de la Peche et de la Pisciculture, pp.19-29, 1999.
, Fisheries stock assessment and decision analysis: The Bayesian approach, Reviews in Fish Biology and Fisheries, vol.7, pp.35-63, 1997.
, Index measures and stock assessment in Atlantic salmon, pp.137-176, 2001.
, Recent international agreements and the precautionary approach: new directions for fisheries management science, Canadian Journal of Fisheries and Aquatic Sciences, vol.55, pp.1545-1552, 1998.
, Spatial and temporal variability in bull trout redd counts, North American Journal of Fisheries Management, vol.16, pp.132-141, 1996.
, Use of Redd counts to detect trends in bull trout (Salvelinus confluentus) populations, Conservation Biology, vol.11, pp.1015-1018, 1997.
, Effective population size and genetic conservation criteria for bull trout, North American Journal of Fisheries Management, vol.21, pp.756-764, 2001.
, Negative Bias in Removal Estimates of Atlantic Salmon Parr Relative to Stream Size, Journal of Freshwater Ecology, vol.8, pp.97-101, 1993.
, Hierarchical Bayesian analysis of capture-mark-recapture data, Canadian Journal of Fisheries and Aquatic Sciences, vol.59, pp.1768-1784, 2002.
, A Bayesian state-space modelling framework for fitting a salmon stage-structured population dynamic model to multiple time series of field data, Ecological Modelling, vol.179, pp.463-485, 2004.
URL : https://hal.archives-ouvertes.fr/hal-02674768
, Entre savoir et decision, l'expertise scientifique. Collection Sciences en question, INRA Editions, INRA, vol.111, p.pp, 1997.
, Scientific review of definitions of overfishing in U.S Fishery management plan, p.45, 1994.
, Precautionary management reference points and management strategies. in Precautionary approach to fisheries. Part 2: Scientific papers, FAO. Fisheries Technical paper, issue.350, pp.129-139, 1996.
, Validation of Abundance Estimates from Mark-Recapture and Removal Techniques for Rainbow Trout Captured by Electrofishing in Small Streams, North American Journal of Fisheries Management, vol.25, pp.1395-1410, 2005.
, Hierarchical models of animal abundance and occurrence, Journal of Agricultural Biological and Environmental Statistics, vol.11, pp.249-263, 2006.
, A management oriented approach to stock recruitment analysis, Canadian Journal of Fisheries and Aquatic Sciences, vol.53, pp.1281-1293, 1996.
, Use and abuse of fishery models, Canadian Journal of Fisheries and Aquatic Sciences, vol.58, pp.10-17, 2001.
, Estimating salmon stock-recruitment relationships from catch and escapement data, Canadian Journal of Fisheries and Aquatic Sciences, vol.59, pp.433-449, 2002.
, Assessment of the counting accuracy of the Vaki infrared counter on chum salmon, North American Journal of Fisheries Management, vol.24, pp.249-252, 2004.
, Predicting the number of new species in further taxonomic sampling, Ecology, vol.84, pp.798-804, 2003.
, Editors) 1993. Risk evaluation and biological reference points for fisheries management, Canadian Special publication of Fisheries and Aquatic Sciences, vol.120
, On fitting a population model in the presence of observation error, Ecology, vol.79, pp.1463-1466, 1998.
, , 2003.
, WinBUGS: User Manual, version 2.10, Medical research Council Biostatistics unit, 2007.
, BUGS: a program to perform Bayesian inference using Gibbs sampling, Bayesian statistics, vol.4, pp.837-842, 1992.
, Making BUGS Open. R News, vol.6, pp.12-17, 2006.
, Dynamics of chinook salmon populations within Idaho's Frank Church Wilderness: Implications for persistence, A Time of Change Conference, vol.3, pp.143-151, 2000.
, Structured-Population models in Marine,Terrestrial ans Freshwater System, p.656, 1997.
, Bayesian methods in conservation biology, Conservation Biology, vol.14, pp.1308-1316, 2000.
, The conservation of exploited species in an uncertain world: Novel methods and the failure of traditional techniques. Conservation of Exploited Species, pp.110-143, 2001.
, Nonstationarity of production relationships in exploited populations, Canadian Journal of Fisheries and Aquatic Sciences, vol.44, pp.156-165, 1987.
, Calculation of Bayes Posterior Probability-Distributions for Key Population Parameters, Canadian Journal of Fisheries and Aquatic Sciences, vol.51, pp.713-722, 1994.
, Analysis of stock-recruitment data for deriving escapement reference points, pp.67-94, 2001.
, A comparison of allozymes and mitochondrial DNA in Atlantic salmon from Tasmania and from the ancestral population in Canada, Fisheries Ecology and Managament, vol.126, pp.257-264, 1994.
, Uncertainty and precautionary management of marine fisheries: can the old methods fit the new mandates?, Fisheries, vol.25, issue.12, pp.6-14, 2000.
, Ultrasonic tracking of Atlantic salmon (Salmo salar L.). 1. Movements in coastal regions, Drottingholm Report, vol.60, pp.102-120, 1982.
, Analysis and Management of animal populations, 2002.
, Juvenile salmon stock assessment and monitoring by the national authority -a review. In Production of juvenile Atlantic salmon, Salmo salar, in natural waters, Gibson RJ & Cutting RE, pp.123-126, 1993.
, The use of Bayesian model averaging to better represent uncertainty in ecological models, Conservation Biology, vol.17, pp.1579-1590, 2003.
, Estimating riverine fish population size from single-and multiple-pass removal sampling using a hierarchical model, Canadian Journal of Fisheries and Aquatic Sciences, vol.59, pp.695-706, 2002.