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EuGene-PP: a next generation automated annotation pipeline for prokaryotic genomes.

Abstract : It is now easy and increasingly usual to produce oriented RNA-Seq data as a prokaryotic genome is being sequenced. However, this information is usually just used for expression quantification. EuGene-PP is a fully automated pipeline for structural annotation of prokaryotic genomes integrating protein similarities, statistical information and any oriented expression information (RNA-Seq or tiling arrays) through a variety of file formats to produce a qualitatively enriched annotation including coding regions but also (possibly antisense) non-coding genes and transcription start sites.
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https://hal.inrae.fr/hal-02632297
Déposant : Migration Prodinra <>
Soumis le : mercredi 27 mai 2020 - 10:28:51
Dernière modification le : mercredi 2 septembre 2020 - 03:00:51

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Erika Sallet, Jerome Gouzy, Thomas Schiex. EuGene-PP: a next generation automated annotation pipeline for prokaryotic genomes.. Bioinformatics, Oxford University Press (OUP), 2014, 30 (18), pp.2659-2661. ⟨10.1093/bioinformatics/btu366⟩. ⟨hal-02632297⟩

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