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Journal Articles Bioinformatics Year : 2014

EuGene-PP: a next generation automated annotation pipeline for prokaryotic genomes.

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Abstract

It is now easy and increasingly usual to produce oriented RNA-Seq data as a prokaryotic genome is being sequenced. However, this information is usually just used for expression quantification. EuGene-PP is a fully automated pipeline for structural annotation of prokaryotic genomes integrating protein similarities, statistical information and any oriented expression information (RNA-Seq or tiling arrays) through a variety of file formats to produce a qualitatively enriched annotation including coding regions but also (possibly antisense) non-coding genes and transcription start sites.

Dates and versions

hal-02632297 , version 1 (27-05-2020)

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Erika Sallet, Jerome Gouzy, Thomas Schiex. EuGene-PP: a next generation automated annotation pipeline for prokaryotic genomes.. Bioinformatics, 2014, 30 (18), pp.2659-2661. ⟨10.1093/bioinformatics/btu366⟩. ⟨hal-02632297⟩
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