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Journal articles

CAR(H)(T)AGene: multipopulation integrated genetic and radiation hybrid mapping

Simon de Givry 1 Martin Bouchez 2 Patrick Chabrier 1 Denis Milan 3 Thomas Schiex 1
1 UBIA - Unité de Biométrie et Intelligence Artificielle
2 Services déconcentrés d'appui à la recherche - Toulouse
3 LGC - Laboratoire de Génétique Cellulaire
Abstract : CarthaGene: is an integrated genetic and radiation hybrid (RH) mapping tool which can deal with multiple populations, including mixtures of genetic and RH data. CarthaGene: performs multipoint maximum likelihood estimations with accelerated expectation– maximization algorithms for some pedigrees and has sophisticated algorithms for marker ordering. Dedicated heuristics for framework mapping are also included. Carth aGene: can be used as a C++ library, through a shell command and a graphical interface. The XML output for companion tools is integrated.
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Journal articles
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https://hal.inrae.fr/hal-02682633
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Submitted on : Monday, June 1, 2020 - 1:31:58 AM
Last modification on : Wednesday, March 23, 2022 - 3:47:16 AM

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INRAE | INRA | INSMI | GENPHYSE | GENETIQUE_ANIMALE

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Simon de Givry, Martin Bouchez, Patrick Chabrier, Denis Milan, Thomas Schiex. CAR(H)(T)AGene: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics, Oxford University Press (OUP), 2005, 21 (5), pp.1703-1704. ⟨10.1093/bioinformatics/bti222⟩. ⟨hal-02682633⟩

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