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Conference Papers Year : 2017

The IWGSC Reference genome browser, data mining and beyond

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Michael Alaux
  • Function : Author
  • PersonId : 1203737
Thomas Letellier
  • Function : Author
  • PersonId : 1203739
Claire Guerche
  • Function : Author
  • PersonId : 1203743
Mikaël Loaec
  • Function : Author
  • PersonId : 1203746
Célia Michotey
Hadi Quesneville

Abstract

URGI is a genomics and bioinformatics research unit at INRA (French National institute for Agricultural Research), dedicated to plants and crop parasites. We develop and maintain a genomic and genetic Information System called GnpIS that manages multiple types of wheat data. Under the umbrella of the IWGSC (International Wheat Genome Sequencing Consortium), we have set up a Sequence Repository on the Wheat@URGI website to store, browse and query the data being generated by the consortium: http://wheat-urgi.versailles.inra.fr/Seq-Repository. The repository holds the wheat physical maps and sequences, especially the gold standard IWGSC reference sequence of all the pseudomolecules. We set-up dedicated tools: a genome browser to display the reference sequence and his incoming annotations. a BLAST server to query the sequence and provide links to browsers. a InterMine datawarehouse to integrate the genomics data with genetics and phenomics data to go beyond.
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Dates and versions

hal-02788141 , version 1 (05-06-2020)

Identifiers

  • HAL Id : hal-02788141 , version 1
  • PRODINRA : 433036

Cite

Michael Alaux, Thomas Letellier, Françoise Alfama Depauw, Jane Rogers, Frédéric Choulet, et al.. The IWGSC Reference genome browser, data mining and beyond. PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States. ⟨hal-02788141⟩
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