Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

Beatriz Sabater-Munoz; Fabrice Legeai; Claude Rispe; Joël Bonhomme; Peter Dearden; Carole Dossat; Aymeric Duclert; Jean-Pierre Gauthier; Danièle Giblot Ducray; Wayne Hunter; Phat Dang; Srini Kambhampati; David Martinez-Torres; Teresa Cortes; Andrès Moya; Atsushi Nakabachi; Cathy Philippe; Nathalie Prunier-Leterme; Yvan Rahbé; Jean-Christophe Simon; David L. Stern; Patrick Wincker; Denis Tagu

doi:10.1186/gb-2006-7-3-r21

Journal Articles Genome Biology Year : 2006

Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

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Beatriz Sabater-Munoz

Function : Author

Biologie des organismes et des populations appliquées à la protection des plantes

Fabrice Legeai

Function : Author

Unité de Recherche Génomique Info

Claude Rispe

Function : Author
PersonId : 747293
IdHAL : claude-rispe
ORCID : 0000-0002-9489-5719
IdRef : 09094755X

Biologie des organismes et des populations appliquées à la protection des plantes

Joël Bonhomme

Function : Author

Biologie des organismes et des populations appliquées à la protection des plantes

Peter Dearden

Function : Author

Biochemistry Department

University of Otago [Dunedin, Nouvelle-Zélande]

Carole Dossat

Function : Author

Génomique métabolique

Aymeric Duclert

Function : Author

Unité de Recherche Génomique Info

Jean-Pierre Gauthier

Function : Author

Biologie des organismes et des populations appliquées à la protection des plantes

Danièle Giblot Ducray

Function : Author

Biologie des organismes et des populations appliquées à la protection des plantes

Wayne Hunter

Function : Author

Horticultural Research Laboratory

U.S. Horticultural Research Laboratory ( Fort Pierce, USA)

Phat Dang

Function : Author

Horticultural Research Laboratory

U.S. Horticultural Research Laboratory ( Fort Pierce, USA)

Srini Kambhampati

Function : Author

Department of Entomology

David Martinez-Torres

Function : Author

Institut Cavanilles de Biodiversitat i Biologia Evolutiva

Teresa Cortes

Function : Author

Institut Cavanilles de Biodiversitat i Biologia Evolutiva

Andrès Moya

Function : Author

Institut Cavanilles de Biodiversitat i Biologia Evolutiva

Atsushi Nakabachi

Function : Author

Environmental Molecular Biology Laboratory

Cathy Philippe

Function : Author

Unité de Recherche Génomique Info

Nathalie Prunier-Leterme

Function : Author

Biologie des organismes et des populations appliquées à la protection des plantes

Yvan Rahbé

Function : Author
PersonId : 2962
IdHAL : yvan-rahbe
ORCID : 0000-0002-0074-4443
IdRef : 074616234

Biologie Fonctionnelle, Insectes et Interactions

Jean-Christophe Simon

Function : Author
PersonId : 745246
IdHAL : jeanchristophesimon
ORCID : 0000-0003-0620-5835
IdRef : 090947193

Biologie des organismes et des populations appliquées à la protection des plantes

AGROCAMPUS OUEST

David L. Stern

Function : Author

Department of Ecology and Evolutionary Biology [Princeton]

Patrick Wincker

Function : Author
PersonId : 757160
ORCID : 0000-0001-7562-3454

Génomique métabolique

Denis Tagu

Function : Author
PersonId : 734854
IdHAL : denis-tagu
ORCID : 0000-0002-6320-8648
IdRef : 034185828

Biologie des organismes et des populations appliquées à la protection des plantes

Abstract

Aphids are the leading pests in agricultural crops. A large-scale sequencing of 40,904 ESTs from the pea aphid Acyrthosiphon pisum was carried out to define a catalog of 12,082 unique transcripts. A strong AT bias was found, indicating a compositional shift between Drosophila melanogaster and A. pisum. An in silico profiling analysis characterized 135 transcripts specific to pea-aphid tissues (relating to bacteriocytes and parthenogenetic embryos). This project is the first to address the genetics of the Hemiptera and of a hemimetabolous insect.

Keywords

Codon Position Aphid Species Additional Data File Gene Ontology cDNA Library

Domains

Computer Science [cs] Bioinformatics [q-bio.QM] Life Sciences [q-bio] Quantitative Methods [q-bio.QM] Life Sciences [q-bio] Vegetal Biology

Fichier principal

gb-2006-7-3-r21.pdf (371.85 Ko)

Origin : Publisher files allowed on an open archive

Fabrice Legeai : Connect in order to contact the contributor

https://hal.inria.fr/inria-00180157

Submitted on : Wednesday, January 16, 2019-11:28:40 AM

Last modification on : Friday, March 24, 2023-2:53:09 PM

Dates and versions

inria-00180157 , version 1 (16-01-2019)

Licence

Attribution - CC BY 4.0

Identifiers

HAL Id : inria-00180157 , version 1
DOI : 10.1186/gb-2006-7-3-r21
PRODINRA : 10933

Cite

Beatriz Sabater-Munoz, Fabrice Legeai, Claude Rispe, Joël Bonhomme, Peter Dearden, et al.. Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera). Genome Biology, 2006, 7-3 (r21), pp.1-11. ⟨10.1186/gb-2006-7-3-r21⟩. ⟨inria-00180157⟩

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Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

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