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Recruitment of a Lineage-Specific Virulence Regulatory Pathway Promotes Intracellular Infection by a Plant Pathogen Experimentally Evolved into a Legume Symbiont

 Delphine Capela , Marta Marchetti , Camille Clerissi , Anthony Perrier , Dorian Guetta , et al.
Molecular Biology and Evolution, 2017, 34 (10), pp.2503-2521. ⟨10.1093/molbev/msx165⟩
Article dans une revue hal-02620519v1
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Experimental Evolution as a Tool to Investigate Natural Processes and Molecular Functions

 Philippe Remigi , Catherine Masson-Boivin , Eduardo P C Rocha
Trends in Microbiology, 2019, 27 (7), pp.623-634. ⟨10.1016/j.tim.2019.02.003⟩
Article dans une revue hal-02329724v1
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1926–2016: 90 Years of listeriology

 Alice Lebreton , Fabrizia Stavru , Sylvain Brisse , Pascale Cossart
Microbes and Infection, 2016, 18 (12), pp.711 - 723. ⟨10.1016/j.micinf.2016.10.009⟩
Article dans une revue hal-01400517v2

Biofilms structural diversity of 100 strains of the food-borne pathogen Listeria monocytogenes

 Morgan Guilbaud , Pascal Piveteau , Sylvain Brisse , Romain Briandet
BIOFILMS 5, Dec 2012, PARIS, France
Poster de conférence hal-01570155v1
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Transient Hypermutagenesis Accelerates the Evolution of Legume Endosymbionts following Horizontal Gene Transfer

 Philippe Remigi , Delphine Capela , Camille Clerissi , Léna Tasse , Rachel Torchet , et al.
PLoS Biology, 2014, 12 (9), ⟨10.1371/journal.pbio.1001942⟩
Article dans une revue pasteur-01374959v1
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In Silico Analysis of Usher Encoding Genes in Klebsiella pneumoniae and Characterization of Their Role in Adhesion and Colonization

 Fida Khater , Damien Balestrino , Nicolas Charbonnel , Jean François Dufayard , Sylvain Brisse , et al.
PLoS ONE, 2015, 10 (3), ⟨10.1371/journal.pone.0116215⟩
Article dans une revue hal-01393629v1
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Role of Klebsiella pneumoniae Type VI secretion system (T6SS) in long-term gastrointestinal colonization

 Thomas Merciecca , Stéphanie Bornes , Laurence Nakusi , Sébastien Theil , Olaya Rendueles , et al.
Scientific Reports, 2022, 12 (1), pp.16968. ⟨10.1038/s41598-022-21396-w⟩
Article dans une revue pasteur-03809977v1
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Exploring the diversity of listeria monocytogenes biofilm architecture by high-throughput confocal laser scanning microscopy and the predominance of the honeycomb-like morphotype

 Morgan Guilbaud , Pascal Piveteau , Mickaël Desvaux , Sylvain Brisse , Romain Briandet
Applied and Environmental Microbiology, 2015, 81 (5), pp.1813-1819. ⟨10.1128/AEM.03173-14⟩
Article dans une revue hal-01204409v1
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Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

 Alexandra Moura , Alexis Criscuolo , Hannes Pouseele , Mylène M. Maury , Alexandre Leclercq , et al.
Nature Microbiology, 2016, 2, pp.16185. ⟨10.1038/nmicrobiol.2016.185⟩
Article dans une revue pasteur-01415883v1

Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime

 Marta Marchetti , Camille Clerissi , Yasmine Yousfi , Carine Gris , Olivier Bouchez , et al.
Molecular Ecology, 2017, 26 (7), pp.1818-1831. ⟨10.1111/mec.13895⟩
Article dans une revue hal-01607703v1
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Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms

 Nicolas Flaugnatti , Sandrine Isaac , Leonardo Lemos Rocha , Sandrine Stutzmann , Olaya Rendueles , et al.
Nature Communications, 2021, 12 (1), 13 p. ⟨10.1038/s41467-021-26041-0⟩
Article dans une revue pasteur-03364094v1
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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

 Guillaume Gautreau , Adelme Bazin , Mathieu Gachet , Rémi Planel , Laura Burlot , et al.
PLoS Computational Biology, 2020, ⟨10.1371/journal.pcbi.1007732⟩
Article dans une revue hal-03089210v1

PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

 Guillaume Gautreau , Christophe Ambroise , Catherine Matias , Amandine Perrin , Rémi Planel , et al.
Genome Informatics 2018, Sep 2018, Hinxton, Cambridge, United Kingdom
Communication dans un congrès hal-04356757v1

PanGBank: depicting microbial species diversity via PPanGGOLiN

 Guillaume Gautreau , Adelme Bazin , Rémi Planel , Mathieu Gachet , Mathieu Dubois , et al.
JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Poster de conférence hal-04358380v1
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Complete Genome Sequence of the Fish Pathogen Flavobacterium branchiophilum

 M. Touchon , P. Barbier , J.-F. Bernardet , V. Loux , Benoît Vacherie , et al.
Applied and Environmental Microbiology, 2011, 77 (21), pp.7656 - 7662. ⟨10.1128/AEM.05625-11⟩
Article dans une revue pasteur-01374942v1

Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water

 Paul Barbier , Armel A. Houel , Valentin Loux , Julie Poulain , Jean-François Bernardet , et al.
Journal of Bacteriology, 2012, 194 (11), pp.3024-3025. ⟨10.1128/JB.00420-12⟩
Article dans une revue hal-02643519v1
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The absence of surface D-alanylation, localized on lipoteichoic acid, impacts the Clostridioides difficile way of life and antibiotic resistance

 Pierre-Alexandre Lacotte , Sandrine Denis-Quanquin , Eva Chatonnat , Julie Le Bris , David Leparfait , et al.
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1267662⟩
Article dans une revue hal-04281897v1
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A PNPase dependent CRISPR System in Listeria.

 Nina Sesto , Marie Touchon , José Marques Andrade , Jiro Kondo , Eduardo P C Rocha , et al.
PLoS Genetics, 2014, 10 (1), pp.e1004065. ⟨10.1371/journal.pgen.1004065⟩
Article dans une revue pasteur-01145428v1
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HflXr mediates a novel antibiotic resistance mechanism 1 2

 Mélodie Duval , Daniel Dar , Filipe Carvalho , Eduardo P C Rocha , Rotem Sorek , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (52), pp.13359-13364. ⟨10.1073/pnas.1810555115⟩
Article dans une revue hal-02329775v1
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Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases

 Camille D’humières , Margot Delavy , Laurie Alla , Farid Ichou , Emilie Gauliard , et al.
Microbiome, 2024, 12 (1), pp.50. ⟨10.1186/s40168-023-01746-0⟩
Article dans une revue hal-04582235v1

PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph

 Guillaume Gautreau , Christophe Ambroise , Catherine Matias , Amandine Perrin , Rémi Planel , et al.
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Communication dans un congrès hal-04355945v1
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Phage-host coevolution in natural populations

 Damien Piel , Maxime Bruto , Yannick Labreuche , François Blanquart , David Goudenège , et al.
Nature Microbiology, 2022, 7 (7), pp.1075-1086. ⟨10.1038/s41564-022-01157-1⟩
Article dans une revue hal-03738913v2

From the Flavobacterium genus to the phylum Bacteroidetes: genomic analysis of dnd gene clusters

 Paul Barbier , Aurélie Lunazzi , Erina Fujiwara-Nagata , Ruben Avendaño-Herrera , Jean-François Bernardet , et al.
FEMS Microbiology Letters, 2013, 348 (1), pp.26-35. ⟨10.1111/1574-6968.12239⟩
Article dans une revue hal-02647249v1
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Assisted transcriptome reconstruction and splicing orthology

 Samuel Blanquart , Jean-Stéphane Varré , Paul Guertin , Amandine Perrin , Anne Bergeron , et al.
BMC Genomics, 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786. ⟨10.1186/s12864-016-3103-6⟩
Article dans une revue hal-01396410v1
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Mining zebrafish microbiota reveals key community-level resistance against fish pathogen infection

 Franziska Stressmann , Joaquin Bernal-Bayard , David Pérez-Pascual , Bianca Audrain , Olaya Rendueles , et al.
2020
Pré-publication, Document de travail pasteur-02873606v1
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Adaptation mechanisms of Clostridioides difficile to auranofin and its impact on human gut microbiota

 Cyril Anjou , Marie Royer , Émilie Bertrand , Marius Bredon , Julie Le Bris , et al.
npj Biofilms and Microbiomes, 2024, 10 (1), pp.86. ⟨10.1038/s41522-024-00551-3⟩
Article dans une revue hal-04756892v1
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Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity.

 Christophe Bécavin , Christiane Bouchier , Pierre Lechat , Cristel Archambaud , Sophie Creno , et al.
mBio, 2014, 5 (2), pp.e00969-14. ⟨10.1128/mBio.00969-14⟩
Article dans une revue pasteur-01145480v1

Specialization of Hepatitis C Virus Envelope Glycoproteins for B Lymphocytes in Chronically Infected Patients

 Florian Douam , Louis-Marie Bobay , Guillemette Maurin , Judith Fresquet , Noémie Calland , et al.
Journal of Virology, 2016, 90 (2), pp.992-1008. ⟨10.1128/JVI.02516-15⟩
Article dans une revue hal-01911210v1
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Les applications antibactériennes des bactériophages

 Mireille Ansaldi , Pascale Boulanger , Charlotte Brives , Claire Le Hénaff , Laurent Debarbieux , et al.
Virologie, 2020, 24 (1), pp.23-36. ⟨10.1684/vir.2019.0805⟩
Article dans une revue hal-02530998v1
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Parallels between experimental and natural evolution of legume symbionts

 Camille Clerissi , Marie Touchon , Delphine Capela , Mingxing Tang , Stéphane Cruveiller , et al.
Nature Communications, 2018, 9 (1), pp.2264. ⟨10.1038/s41467-018-04778-5⟩
Article dans une revue cea-01880286v1
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