Buffer zones between wastewater treatment plants and receiving water bodies have recently gained interest in France. These Planted Discharge Areas (PDAs) receive treated wastewater, and may have various designs aiming to mimic “natural” kinds of wetlands. Research is needed to assess the treatment efficiency of such systems: a comprehensive study is carried out to understand the fate of water, conventional pollutants (suspended solids, organic carbon, ammonium, and phosphates), micro pollutants that are refractory to up-stream biological treatment, and pathogens. Special attention must be paid to understand the fate of the infiltrated treated wastewater in the field where PDAs are built, in order to ensure their long-term operation (system scale) and to protect the underground water bodies (site scale). To address these issues, the authors propose a comprehensive strategy combining successive stages using either geological or hydrological methods. These techniques provide the following prominent information for a proper design of PDAs: (1) the number and the location of the different soil layers; (2) the infiltration capacity of each layers; (3) the water table (height of the groundwater). Furthermore, the seasonal variation (if any) of the land characteristics are also determined. The proposed strategy successfully determined the fate of the infiltrated treated wastewater on the land considered before the implementation of the semi-industrial scale PDAs in Bordeaux. Besides, methods used for long-term PDA efficiency assessment are presented.