Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species

Niklas Tysklind; Celine Blanc-Jolivet; Malte Mader; Barbara R. V. Meyer-Sand; Kathelyn Paredes-Villanueva; Eurídice N. Honorio Coronado; Carmen R. García-Dávila; Alexandre M. Sebbenn; Henri Caron; Valérie Troispoux; Erwan Guichoux; Bernd Degen

doi:10.1007/s12686-019-01090-2

Article dans une revue

Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species

Niklas Tysklind ¹ Celine Blanc-Jolivet ² Malte Mader ² Barbara R. V. Meyer-Sand ³ Kathelyn Paredes-Villanueva ⁴ Eurídice N. Honorio Coronado ⁵ Carmen R. García-Dávila ⁵ Alexandre M. Sebbenn ⁶ Henri Caron ¹ Valérie Troispoux ¹ Erwan Guichoux ⁷ Bernd Degen ²

1 UMR ECOFOG - Ecologie des forêts de Guyane

2 Thünen Institute of Forest Genetics

3 UNESP - Universidade Estadual Paulista Julio de Mesquita Filho

4 Universidad Autonoma Gabriel René Moreno

5 IIAP - Instituto de Investigaciones de la Amazonía Peruana

6 Instituto Florestal de São Paulo

7 BioGeCo - Biodiversité, Gènes & Communautés

Abstract : Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping.

Mots-clés : Carapa surinamensis

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Article dans une revue

Domaine :

Sciences du Vivant [q-bio]

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https://hal.inrae.fr/hal-02619672
Déposant : Migration Prodinra <>
Soumis le : lundi 25 mai 2020 - 20:20:58
Dernière modification le : jeudi 25 février 2021 - 14:26:02

Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species

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Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species

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