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Article Dans Une Revue Bioinformatics Année : 2016

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.

Résumé

Motivation: High-throughput sequencing technologies provide access to an increasing number of bacterial genomes. Today, many analyses involve the comparison of biological properties among many strains of a given species, or among species of a particular genus. Tools that can help the microbiologist with these tasks become increasingly important. Results: Insyght is a comparative visualization tool whose core features combine a synchronized navigation across genomic data of multiple organisms with a versatile interoperability between complementary views. In this work, we have greatly increased the scope of the Insyght public data- set by including 2688 complete bacterial genomes available in Ensembl thus vastly improving its phylogenetic coverage. We also report the development of a virtual machine that allows users to easily set up and customize their own local Insyght server.

Dates et versions

hal-02630699 , version 1 (27-05-2020)

Identifiants

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Thomas Lacroix, Sylvie Thérond, Marc Rugeri, Pierre P. Nicolas, Annie Gendrault, et al.. Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.. Bioinformatics, 2016, 32 (7), pp.1083-1084. ⟨10.1093/bioinformatics/btv689⟩. ⟨hal-02630699⟩
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