Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT. - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Article Dans Une Revue Bioinformatics Année : 2016

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.

Résumé

Motivation: High-throughput sequencing technologies provide access to an increasing number of bacterial genomes. Today, many analyses involve the comparison of biological properties among many strains of a given species, or among species of a particular genus. Tools that can help the microbiologist with these tasks become increasingly important. Results: Insyght is a comparative visualization tool whose core features combine a synchronized navigation across genomic data of multiple organisms with a versatile interoperability between complementary views. In this work, we have greatly increased the scope of the Insyght public data- set by including 2688 complete bacterial genomes available in Ensembl thus vastly improving its phylogenetic coverage. We also report the development of a virtual machine that allows users to easily set up and customize their own local Insyght server.

Dates et versions

hal-02630699 , version 1 (27-05-2020)

Identifiants

Citer

Thomas Lacroix, Sylvie Thérond, Marc Rugeri, Pierre P. Nicolas, Annie Gendrault, et al.. Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.. Bioinformatics, 2016, 32 (7), pp.1083-1084. ⟨10.1093/bioinformatics/btv689⟩. ⟨hal-02630699⟩
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