The genome of Tetranychus urticae reveals herbivorous pest adaptations
Miodrag Grbic
(1, 2)
,
Thomas van Leeuwen
(3)
,
Richard M. Clark
(4)
,
Stephane Rombauts
(5, 6)
,
Pierre Rouzé
(6, 5)
,
Vojislava Grbic
(1, 2)
,
Edward J. Osborne
(4)
,
Wannes Dermauw
(3)
,
- Phuong Cao Thi Ngoc
(6)
,
Felix Ortego
(7)
,
Pedro Hernández-Crespo
(7)
,
Isabel Díaz
(8)
,
Manuel Martinez
(8)
,
Maria Navajas Navarro
(9)
,
Elio Sucena
(10, 11)
,
Sara Magalhães
(11)
,
Lisa Nagy
(12)
,
Ryan M. Pace
(12)
,
Sergej Djuranović
(13)
,
Guy Smagghe
(3)
,
Masatoshi Iga
(3)
,
Olivier Christiaens
(3)
,
Jan A. Veenstra
(14)
,
John Ewer
(15)
,
Rodrigo Mancilla Villalobos
(15)
,
Jeffrey L. Hutter
(16)
,
Stephen D. Hudson
(16)
,
Marisela Velez
(17, 18)
,
- Soojin V. Yi
(19)
,
- Jia Zeng
(19)
,
Andre Pires-Dasilva
(20)
,
Fernando Roch
(21, 22)
,
Marc Cazaux
(1)
,
Marie Navarro
(1)
,
Vladimir Zhurov
(1)
,
Gustavo Acevedo
(1)
,
Anica Bjelica
(1)
,
Jeffrey A. Fawcett
(6, 5)
,
Eric Bonnet
(5, 6)
,
Cindy Martens
(6, 5)
,
Guy Baele
(6, 5)
,
Lothar Wissler
(23)
,
Aminael Sánchez-Rodríguez
(24)
,
Luc Tirry
(3)
,
Catherine Blais
(25, 26)
,
Kristof Demeestere
(3)
,
Stefan R. Henz
(27)
,
T. Ryan Gregory
(28)
,
Johannes Mathieu
(29)
,
Lou Verdon
(30)
,
Laurent Farinelli
(31)
,
Jeremy Schmutz
(32, 33)
,
Erika Lindquist
(33)
,
René Feyereisen
(34)
,
Yves van de Peer
(6, 5)
1
Department of Biology
2 Instituto de Ciencias de la Vid y el Vino - Institute of Grapevine and Wine Sciences
3 Faculty of Bioscience Engineering
4 Department of Biology
5 Department of plant Biotechnology and Bioinformatics
6 Department of plant systems biology
7 CIB - Centro de Investigaciones Biológicas
8 INIA - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology
9 UMR CBGP - Centre de Biologie pour la Gestion des Populations
10 Instituto Gulbenkian de Ciência
11 NOVA - Universidade Nova de Lisboa = NOVA University Lisbon
12 Department of Molecular and Cellular Biology [University of Arizona]
13 School of Medicine
14 INCIA - Institut de Neurosciences cognitives et intégratives d'Aquitaine
15 Universidad de Valparaiso
16 UWO - University of Western Ontario
17 CSIC - Consejo Superior de Investigaciones Cientificas [España] = Spanish National Research Council [Spain]
18 Facultad de Ciencas [Madrid]
19 School of Biology
20 University of Texas
21 UT Capitole - Université Toulouse Capitole
22 CNRS - Centre National de la Recherche Scientifique
23 IEB - Institute for Evolution and Biodiversity
24 UCL - Université Catholique de Louvain = Catholic University of Louvain
25 UPMC - Université Pierre et Marie Curie - Paris 6
26 LBD - Laboratoire de Biologie du Développement [IBPS]
27 Max Planck Institute for Developmental Biology
28 University of Guelph - Department of Integrative Biology
29 Boyce Thompson Institute [Ithaca]
30 Southern Crop Protection and Food Research Centre
31 Fasteris SA [Plan-les-Ouates, Switzerland]
32 Hudson Alpha Institute for Biotechnology
33 JGI - Joint Genome Institute
34 IBSV - Interactions Biotiques et Santé Végétale
2 Instituto de Ciencias de la Vid y el Vino - Institute of Grapevine and Wine Sciences
3 Faculty of Bioscience Engineering
4 Department of Biology
5 Department of plant Biotechnology and Bioinformatics
6 Department of plant systems biology
7 CIB - Centro de Investigaciones Biológicas
8 INIA - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology
9 UMR CBGP - Centre de Biologie pour la Gestion des Populations
10 Instituto Gulbenkian de Ciência
11 NOVA - Universidade Nova de Lisboa = NOVA University Lisbon
12 Department of Molecular and Cellular Biology [University of Arizona]
13 School of Medicine
14 INCIA - Institut de Neurosciences cognitives et intégratives d'Aquitaine
15 Universidad de Valparaiso
16 UWO - University of Western Ontario
17 CSIC - Consejo Superior de Investigaciones Cientificas [España] = Spanish National Research Council [Spain]
18 Facultad de Ciencas [Madrid]
19 School of Biology
20 University of Texas
21 UT Capitole - Université Toulouse Capitole
22 CNRS - Centre National de la Recherche Scientifique
23 IEB - Institute for Evolution and Biodiversity
24 UCL - Université Catholique de Louvain = Catholic University of Louvain
25 UPMC - Université Pierre et Marie Curie - Paris 6
26 LBD - Laboratoire de Biologie du Développement [IBPS]
27 Max Planck Institute for Developmental Biology
28 University of Guelph - Department of Integrative Biology
29 Boyce Thompson Institute [Ithaca]
30 Southern Crop Protection and Food Research Centre
31 Fasteris SA [Plan-les-Ouates, Switzerland]
32 Hudson Alpha Institute for Biotechnology
33 JGI - Joint Genome Institute
34 IBSV - Interactions Biotiques et Santé Végétale
Sara Magalhães
- Fonction : Auteur
- PersonId : 763396
- ORCID : 0000-0002-8609-7768
- IdRef : 178876607
Fernando Roch
- Fonction : Auteur
- PersonId : 1298253
- IdHAL : fernando-roch
- ORCID : 0000-0002-0512-8631
Guy Baele
- Fonction : Auteur
- PersonId : 761656
- ORCID : 0000-0002-1915-7732
Yves van de Peer
- Fonction : Auteur
- PersonId : 758337
- ORCID : 0000-0003-4327-3730
Résumé
The spider mite Tetranychus urticae is a cosmopolitan agricultural pest with an extensive host plant range and an extreme record of pesticide resistance. Here we present the completely sequenced and annotated spider mite genome, representing the first complete chelicerate genome. At 90 megabases T. urticae has the smallest sequenced arthropod genome. Compared with other arthropods, the spider mite genome shows unique changes in the hormonal environment and organization of the Hox complex, and also reveals evolutionary innovation of silk production. We find strong signatures of polyphagy and detoxification in gene families associated with feeding on different hosts and in new gene families acquired by lateral gene transfer. Deep transcriptome analysis of mites feeding on different plants shows how this pest responds to a changing host environment. The T. urticae genome thus offers new insights into arthropod evolution and plant–herbivore interactions, and provides unique opportunities for developing novel plant protection strategies