DNA reassociation kinetics and diversity indices : richness is not rich enough - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Article Dans Une Revue Oikos Année : 2008

DNA reassociation kinetics and diversity indices : richness is not rich enough

Résumé

DNA reassociation kinetics, also known as Cot curves, were recently used by Gans and co-workers to estimate the number of bacterial species present in soil samples. By reanalysing the mathematical model we show that rather than the number of species, Simpson and Shannon diversity indices are encoded in the experimental data. Our main tool to establish this result are the so-called Renyi diversities, closely related to Hill numbers, illustrating the power of these concepts in interpreting ecological data. We argue that the huge diversity encountered in microbial ecology can be quantified more informatively by diversity indices than by number of species.

Dates et versions

hal-02660651 , version 1 (30-05-2020)

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Bart Haegeman, Dimitri Vanpeteghem, Jean-Jacques Godon, Jérôme J. Hamelin. DNA reassociation kinetics and diversity indices : richness is not rich enough. Oikos, 2008, 117 (2), pp.177-181. ⟨10.1111/j.2007.0030-1299.16311.x⟩. ⟨hal-02660651⟩
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