Skip to Main content Skip to Navigation
Journal articles

FrameDP: sensitive peptide detection on noisy matured sequences

Abstract : Transcriptome sequencing represents a fundamental source of information for genome-wide studies and transcriptome analysis and will become increasingly important for expression analysis as new sequencing technologies takes over array technology. The identification of the protein-coding region in transcript sequences is a prerequisite for systematic amino acid-level analysis and more specifically for domain identification. In this article, we present FrameDP, a self-training integrative pipeline for predicting CDS in transcripts which can adapt itself to different levels of sequence qualities.
Keywords : FrameDP
Document type :
Journal articles
Complete list of metadata

Cited literature [8 references]  Display  Hide  Download

https://hal.inrae.fr/hal-02665259
Contributor : Migration Prodinra Connect in order to contact the contributor
Submitted on : Sunday, May 31, 2020 - 6:25:00 AM
Last modification on : Tuesday, September 28, 2021 - 5:20:19 PM

File

gouzy_framedDP_1.pdf
Publisher files allowed on an open archive

Licence


Distributed under a Creative Commons Attribution - NonCommercial 4.0 International License

Identifiers

Collections

Citation

Jerome Gouzy, Sebastien Carrere, Thomas Schiex. FrameDP: sensitive peptide detection on noisy matured sequences. Bioinformatics, Oxford University Press (OUP), 2009, 25 (5), pp.670-671. ⟨10.1093/bioinformatics/btp024⟩. ⟨hal-02665259⟩

Share

Metrics

Record views

46

Files downloads

78