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Communication Dans Un Congrès Année : 2011

How significant is a threading score?

Résumé

The threading score of a protein sequence should be compared with the threading score distribution of a random amino-acid sequence, of the same length, thread on the same structure. We claim that, due to protein contact map properties, this reference distribution is a Weibull ex- treme value distribution whose parameters depend on threading method, structure, query length and random sequence simulation model used. Parameters can be estimated off-line with simulated sequence samples, for different sequence lengths. They can further be interpolated at the exact length of a query, enabling the quick computation of the p-value.
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hal-02747669 , version 1 (03-06-2020)

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  • HAL Id : hal-02747669 , version 1
  • PRODINRA : 182977

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Afshin Fayyaz Movaghar, Guillaume Launay, Sophie S. Schbath, Jean-François Gibrat, Francois F. Rodolphe. How significant is a threading score?. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Institut Pasteur [Paris]. Paris, FRA., Jun 2011, Paris, France. pp.440. ⟨hal-02747669⟩

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