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RClone : Partially Clonal Populations Analysis

Abstract : R version of 'GenClone' (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization, Arnaud-Haond & Belkhir 2007, ), this package allows clone handling as 'GenClone' does, plus the possibility to work with several populations, MultiLocus Lineages (MLL) custom definition and use, and p-value calculation for psex statistic (probability of originating from distinct sexual events) and psex_Fis statistic (taking account of Hardy-Weinberg equilibrium departure) as 'MLGsim'/'MLGsim2' (a program for detecting clones using a simulation approach, Stenberg et al. 2003).
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Software
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https://hal.inrae.fr/hal-02796064
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Submitted on : Friday, June 5, 2020 - 1:16:43 PM
Last modification on : Wednesday, November 3, 2021 - 4:13:38 AM

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Diane Bailleul, Solenn Stoeckel, Sophie Arnaud-Haond. RClone : Partially Clonal Populations Analysis. 2016. ⟨hal-02796064⟩

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