Biogeographical design of soil microbial habitats - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Communication Dans Un Congrès Année : 2019

Biogeographical design of soil microbial habitats

Jean Villerd
Samuel Dequiedt
Sébastien Terrat
  • Fonction : Auteur
  • PersonId : 1204126
Christophe Djemiel
Mélanie Lelièvre
Julie Tripied
  • Fonction : Auteur
  • PersonId : 1204953
Virginie Nowak
  • Fonction : Auteur
  • PersonId : 1204125
Nicolas Saby
C Jolivet,
D. Arrouays
Patrick Wincker
C Cruaud
Lionel Ranjard

Résumé

Since the beginning of 21th century, soil microbial diversity is intensively studied gathering a huge knowledge at local and global scales. Nevertheless, the microbial habitats have been poorly investigated, limiting our ability to link biodiversity description and regulation. In our study, we used a pyrosequencing approach targeting 16S rRNA genes directly amplified from soil DNA to have a comprehensive view of soil bacterial and archaeal community composition across the largest spatially explicit soil sampling available in France (2173 soils, area covered = 5.5x105 km2). Based on the multivariate regression tree (MRT) method, we designed 16 distinct terrestrial microbial habitats at the territory scale, delineated by the association of soil pH, C:N ratio, land use and minorly climatic conditions. The heterogeneous spatial distribution of habitats drew up a complex mosaic across France. As for plants and animals, each habitat hosts generalist and specialist taxa and a specific interaction network, directly or indirectly impacted by the Human activities. Overall, our results stressed the importance of the integration of microbial habitats for upgrading the biodiversity conservation policies in a context of global change
Fichier non déposé

Dates et versions

hal-02951841 , version 1 (29-09-2020)

Identifiants

  • HAL Id : hal-02951841 , version 1

Citer

Battle Karimi, Jean Villerd, Samuel Dequiedt, Sébastien Terrat, Nicolas Chemidlin Prévost-Bouré, et al.. Biogeographical design of soil microbial habitats. 5ème colloque du GDR de Génomique Environnementale, Oct 2019, La Rochelle, France. ⟨hal-02951841⟩
36 Consultations
0 Téléchargements

Partager

More