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Key questions for next-generation of biomonitoring

Andreas Makiola 1 Zacchaeus G. Compson 2, 3 Donald J Baird 2 Matthew A. Barnes 4 Sam P Boerlijst 5, 6 Agnes Bouchez 7 Georgina Brennan 8 Alex Bush 2, 9 Elsa Canard 10 Tristan Cordier 11 Simon Creer 8 Allen Curry 12 Alex J Dumbrell 13 Dominique Gravel 14 Mehrdad Hajibabaei 15 Berry van Der Hoorn 5 Philippe Jarne 16 J.Iwan Jones 17 Battle Karimi 1 François Keck 7 Martyn Kelly 18 Ineke Knot 19 Louie Krol 5, 6 François Massol 20 Wendy A. Monk 2, 21 John Murphy 17 Jan Pawlowski 11 Timothée Poisot 22 Teresita M. Porter 23, 15 Kate C. Randall 13 Emma Ransome 24 Virginie Ravigné 25 Alan Raybould 26, 27, 28 Stephane S. Robin 29 Maarten Schrama 5, 6 Bertrand Schatz 16 Alireza Tamaddoni- Nezhad 30 Krijn B. Trimbos 6 Corinne Vacher 31 Valentin Vasselon 32 Susie Wood 33 Guy Woodward 24 David Bohan 1 
1 Agroécologie [Dijon]
2 Environment and Climate Change Canada @ Canadian Rivers Institute, Department of Biology, University of New Brunswick, NB, Canada
3 Centre for Environmental Genomics Applications, St. John’s, NL, Canada
4 Department of Natural Resources Management, Texas Tech University, Lubbock, TX, United States
5 Naturalis Biodiversity Center, Leiden, Netherlands
6 Institute of Environmental Sciences, Leiden University, Leiden, Netherlands
7 CARRTEL - Centre Alpin de Recherche sur les Réseaux Trophiques et Ecosystèmes Limniques
8 School of Natural Sciences, Bangor University, Bangor, United Kingdom
9 Lancaster Environment Centre, Lancaster University, Lancaster, United Kingdom
10 IGEPP - Institut de Génétique, Environnement et Protection des Plantes
11 Department of Genetics and Evolution, University of Geneva, Science III, Geneva, Switzerland
12 Canadian Rivers Institute, Biology, Forestry and Environmental Management, University of New Brunswick, Fredericton, NB, Canada
13 School of Biological Sciences, University of Essex, Colchester, United Kingdom
14 Département de Médecine Nucléaire et Radiobiologie - Université de Sherbrooke - Canada
15 Centre for Biodiversity Genomics and Department of Integrative Biology, University of Guelph, Guelph, ON, Canada
16 CEFE - Centre d’Ecologie Fonctionnelle et Evolutive
17 School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom
18 Bowburn Consultancy, Durham, United Kingdom
19 Institute for Biodiversity and Ecosystem Dynamics, Department of Evolutionary and Population Biology, University of Amsterdam, Amsterdam The Netherlands
20 Evo-Eco-Paléo - Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198
21 Faculty of Forestry and Environmental Management, University of New Brunswick, Fredericton, NB, Canada
22 Département de sciences biologiques, Université de Montréal, Montreal, QC, Canada
23 Great Lakes Forestry Centre, Canadian Forest Service, Natural Resources Canada, Sault Ste. Marie, ON, Canada
24 Department of Life Sciences, Silwood Park Campus, Imperial College London, London, United Kingdom
25 UMR PVBMT - Peuplements végétaux et bioagresseurs en milieu tropical
26 Syngenta Crop Protection AG, Basel, Switzerland
27 School of Social and Political Science, The University of Edinburgh, Edinburgh, United Kingdom
28 The Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Global Academy of Agriculture and Food Security, Edinburgh, United Kingdom
29 MIA Paris-Saclay - Mathématiques et Informatique Appliquées
30 UNIS - University of Surrey
31 BioGeCo - Biodiversité, Gènes & Communautés
32 Agence Française pour la Biodiversité, Pôle R&D ECLA, Évian-les-Bains, France
33 Cawthron Institute, Nelson, New Zealand
Abstract : Classical biomonitoring techniques have focused primarily on measures linked to various biodiversity metrics and indicator species. Next-generation biomonitoring (NGB) describes a suite of tools and approaches that allow the examination of a broader spectrum of organizational levels—from genes to entire ecosystems. Here, we frame 10 key questions that we envisage will drive the field of NGB over the next decade. While not exhaustive, this list covers most of the key challenges facing NGB, and provides the basis of the next steps for research and implementation in this field. These questions have been grouped into current- and outlook-related categories, corresponding to the organization of this paper.
Keywords : eDNA metabarcoding biodiversity assessment artificial intelligence ecological networkseDNA ecological networks
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https://hal.inrae.fr/hal-03534007
Contributor : Noureddine EL Mjiyad Connect in order to contact the contributor
Submitted on : Wednesday, January 19, 2022 - 10:54:07 AM
Last modification on : Thursday, August 11, 2022 - 3:07:29 AM

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CIRAD | UNIV-SAVOIE | UNIV-BOURGOGNE | AGROPARISTECH | EPHE | UNIV-RENNES1 | AFRIQ | CNRS | UNIV-MONTP3 | UNIV-REUNION | CEFE | UNAM | MIA-PARIS | UR1-UFR-SVE | PSL | UNIV-PARIS-SACLAY | B3ESTE | UNIV-MONTPELLIER | UNIV-RENNES | UNIV-LILLE | MONTPELLIER-SUPAGRO | INRAE | INRAEOCCITANIEMONTPELLIER | INRAE-AQUA | EVO_ECO_PALEO | UR1-ENV | CARRTEL | GS-MATHEMATIQUES | GS-COMPUTER-SCIENCE | BIOGECO

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Andreas Makiola, Zacchaeus G. Compson, Donald J Baird, Matthew A. Barnes, Sam P Boerlijst, et al.. Key questions for next-generation of biomonitoring. A next-generation of biomonitoring to detect global ecosystem change. Frontiers Research Topics, Frontiers in Ecology and Evolution, pp.91-104, 2020, 978-2-88966-027-8. ⟨10.3389/978-2-88966-027-8⟩. ⟨hal-03534007⟩

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