In this paper, an experimental study upon alkalinity and hydrodynamic behavior in an anaerobic up-flow fixed bed reactor for the treatment of tequila vinasses is presented. Measurements of volatile fatty acids, pH, alkalinity and bicarbonate were obtained at three sampling points in the reactor in the axial axis. Then, the spatial distribution of alkalinity is studied and discussed. Moreover, for further control process purposes, a hydrodynamic model based on the use of two interconnected two-steps reduced AM2 type models is proposed and its parameters are identified using experimental data.