Article Dans Une Revue Nature Communications Année : 2019

A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance

Fanghao Wan (1, 2) , Chuanlin Yin (3) , Rui Tang (2, 4) , Maohua Chen (5) , Qiang Wu (1) , Cong Huang (1, 6) , Wanqiang Qian (2) , Omar Rota-Stabelli (7) , Nianwan Yang (1) , Shuping Wang (8) , Guirong Wang (1) , Guifen Zhang (1) , Jianyang Guo (1) , Liuqi (aloy) Gu (9) , Longfei Chen (3) , Longsheng Xing (2) , Yu Xi (2) , Feiling Liu (1) , Kejian Lin (1) , Mengbo Guo (1) , Wei Liu (1) , Kang He (3) , Ruizheng Tian (5) , Emmanuelle Joly (10) , Pierre Franck (11) , Myriam Siegwart (11) , Lino Ometto (7, 12) , Gianfranco Anfora (7, 13) , Mark Blaxter (14) , Camille Meslin (10) , Petr Nguyen (15, 16) , Martina Dalíková (15, 16) , František Marec (15) , Jerome Olivares (11) , Sandrine Maugin (11) , Jianru Shen (1) , Jinding Liu (1) , Jinmeng Guo (1) , Jiapeng Luo (3) , Bo Liu (2) , Wei Fan (2) , Likai Feng (17) , Xianxin Zhao (3) , Xiong Peng (5) , Kang Wang (5) , Lang Liu (5) , Haixia Zhan (2) , Wanxue Liu (1) , Guoliang Shi (1, 18) , Chunyan Jiang (1, 18) , Jisu Jin (1, 6) , Xiaoqing Xian (1) , Sha Lu (1, 18) , Mingli Ye (19) , Meizhen Li (3) , Minglu Yang (20) , Renci Xiong (20) , James R. Walters (9) , Fei Li (3)
1 State Key Laboratory for Biology of Plant Diseases and Insect Pests
2 CAAS - Chinese Academy of Agricultural Sciences
3 Zhejiang University [Hangzhou, China]
4 State key laboratory of Integrated Management of pest Insects and Rodents, Institute of Zoology
5 Northwest A & F University
6 Hunan Agricultural University [Changsha]
7 FEM - Fondazione Edmund Mach - Edmund Mach Foundation [Italie]
8 Technical Centre for Animal Plant and Food Inspection and Quarantine
9 KU - University of Kansas [Lawrence]
10 iEES Paris - Institut d'écologie et des sciences de l'environnement de Paris
11 PSH - Unité de recherche Plantes et Systèmes de Culture Horticoles
12 Department of Biology and Biotechnology
13 UNITN - Università degli Studi di Trento = University of Trento
14 The University of Edinburgh
15 BIOLOGY CENTRE CAS - Biology Centre of the Czech Academy of Sciences
16 Faculty of Science
17 Xinjiang Academy of Agricultural and Reclamation Sciences
18 Qingdao Agricultural University
19 Zhejiang Shuren University
20 Tarim University
Fanghao Wan
  • Fonction : Auteur
  • PersonId : 987332
State Key Laboratory for Biology of Plant Diseases and Insect Pests
CAAS - Chinese Academy of Agricultural Sciences
Chuanlin Yin
Zhejiang University [Hangzhou, China]
Rui Tang
CAAS - Chinese Academy of Agricultural Sciences
State key laboratory of Integrated Management of pest Insects and Rodents, Institute of Zoology
Maohua Chen
  • Fonction : Auteur
Northwest A & F University
Qiang Wu
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Cong Huang
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Hunan Agricultural University [Changsha]
Wanqiang Qian
  • Fonction : Auteur
CAAS - Chinese Academy of Agricultural Sciences
Omar Rota-Stabelli
  • Fonction : Auteur
FEM - Fondazione Edmund Mach - Edmund Mach Foundation [Italie]
Nianwan Yang
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Shuping Wang
  • Fonction : Auteur
Technical Centre for Animal Plant and Food Inspection and Quarantine
Guirong Wang
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Guifen Zhang
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Jianyang Guo
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Liuqi (aloy) Gu
  • Fonction : Auteur
KU - University of Kansas [Lawrence]
Longfei Chen
  • Fonction : Auteur
Zhejiang University [Hangzhou, China]
Longsheng Xing
  • Fonction : Auteur
CAAS - Chinese Academy of Agricultural Sciences
Yu Xi
  • Fonction : Auteur
CAAS - Chinese Academy of Agricultural Sciences
Feiling Liu
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Kejian Lin
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Mengbo Guo
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Wei Liu
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Kang He
Zhejiang University [Hangzhou, China]
Ruizheng Tian
  • Fonction : Auteur
Northwest A & F University
Emmanuelle Joly
iEES Paris - Institut d'écologie et des sciences de l'environnement de Paris
Pierre Franck
PSH - Unité de recherche Plantes et Systèmes de Culture Horticoles
CV
Myriam Siegwart
PSH - Unité de recherche Plantes et Systèmes de Culture Horticoles
Lino Ometto
FEM - Fondazione Edmund Mach - Edmund Mach Foundation [Italie]
Department of Biology and Biotechnology
Gianfranco Anfora
  • Fonction : Auteur
FEM - Fondazione Edmund Mach - Edmund Mach Foundation [Italie]
UNITN - Università degli Studi di Trento = University of Trento
Mark Blaxter
  • Fonction : Auteur
The University of Edinburgh
Camille Meslin
iEES Paris - Institut d'écologie et des sciences de l'environnement de Paris
CV
Petr Nguyen
BIOLOGY CENTRE CAS - Biology Centre of the Czech Academy of Sciences
Faculty of Science
Martina Dalíková
BIOLOGY CENTRE CAS - Biology Centre of the Czech Academy of Sciences
Faculty of Science
František Marec
BIOLOGY CENTRE CAS - Biology Centre of the Czech Academy of Sciences
Jerome Olivares
PSH - Unité de recherche Plantes et Systèmes de Culture Horticoles
Sandrine Maugin
  • Fonction : Auteur
  • PersonId : 1205299
PSH - Unité de recherche Plantes et Systèmes de Culture Horticoles
Jianru Shen
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Jinding Liu
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Jinmeng Guo
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Jiapeng Luo
  • Fonction : Auteur
Zhejiang University [Hangzhou, China]
Bo Liu
  • Fonction : Auteur
  • PersonId : 761745
  • IdRef : 180847422
CAAS - Chinese Academy of Agricultural Sciences
Wei Fan
CAAS - Chinese Academy of Agricultural Sciences
Likai Feng
  • Fonction : Auteur
Xinjiang Academy of Agricultural and Reclamation Sciences
Xianxin Zhao
  • Fonction : Auteur
Zhejiang University [Hangzhou, China]
Xiong Peng
  • Fonction : Auteur
Northwest A & F University
Kang Wang
  • Fonction : Auteur
Northwest A & F University
Lang Liu
  • Fonction : Auteur
Northwest A & F University
Haixia Zhan
  • Fonction : Auteur
CAAS - Chinese Academy of Agricultural Sciences
Wanxue Liu
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Guoliang Shi
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Qingdao Agricultural University
Chunyan Jiang
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Qingdao Agricultural University
Jisu Jin
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Hunan Agricultural University [Changsha]
Xiaoqing Xian
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Sha Lu
  • Fonction : Auteur
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Qingdao Agricultural University
Mingli Ye
  • Fonction : Auteur
Zhejiang Shuren University
Meizhen Li
  • Fonction : Auteur
Zhejiang University [Hangzhou, China]
Minglu Yang
  • Fonction : Auteur
Tarim University
Renci Xiong
  • Fonction : Auteur
Tarim University
James R. Walters
  • Fonction : Auteur
KU - University of Kansas [Lawrence]
Fei Li
Zhejiang University [Hangzhou, China]

Résumé

The codling moth Cydia pomonella, a major invasive pest of pome fruit, has spread around the globe in the last half century. We generated a chromosome-level scaffold assembly including the Z chromosome and a portion of the W chromosome. This assembly reveals the duplication of an olfactory receptor gene (OR3), which we demonstrate enhances the ability of C. pomonella to exploit kairomones and pheromones in locating both host plants and mates. Genome-wide association studies contrasting insecticide-resistant and susceptible strains identify hundreds of single nucleotide polymorphisms (SNPs) potentially associated with insecticide resistance, including three SNPs found in the promoter of CYP6B2. RNAi knockdown of CYP6B2 increases C. pomonella sensitivity to two insecticides, deltamethrin and azinphos methyl. The high-quality genome assembly of C. pomonella informs the genetic basis of its invasiveness, suggesting the codling moth has distinctive capabilities and adaptive potential that may explain its worldwide expansion.

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hal-02622730 , version 1 (26-05-2020)

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Fanghao Wan, Chuanlin Yin, Rui Tang, Maohua Chen, Qiang Wu, et al.. A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance. Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-12175-9⟩. ⟨hal-02622730⟩

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