GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Article Dans Une Revue (Article De Synthèse) Trends in Genetics Année : 2014

GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis

Résumé

In angiosperms (as in other species), GC content varies along and between genes, within a genome, and between genomes of different species, but the reason for this distribution is still an open question. Grass genomes are particularly intriguing because they exhibit a strong bimodal distribution of genic GC content and a sharp 5'-3' decreasing GC content gradient along most genes. Here, we propose a unifying model to explain the main patterns of GC content variation at the gene and genome scale. We argue that GC content patterns could be mainly determined by the interactions between gene structure, recombination patterns, and GC-biased gene conversion. Recent studies on fine-scale recombination maps in angiosperms support this hypothesis and previous results also fit this model. We propose that our model could be used as a null hypothesis to search for additional forces that affect GC content in angiosperms.
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Dates et versions

hal-02630525 , version 1 (27-05-2020)

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Sylvain Glémin, Yves Clément, Jacques David, Adrienne Ressayre. GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis. Trends in Genetics, 2014, 30 (7), pp.263-270. ⟨10.1016/j.tig.2014.05.002⟩. ⟨hal-02630525⟩
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