Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Access content directly
Journal Articles Developmental Cell Year : 2014

Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis

Abstract

Alternative splicing (AS) of pre-mRNA represents a major mechanism underlying increased transcriptome and proteome complexity. Here, we show that the nuclear speckle RNA-binding protein (NSR) and the AS competitor long noncoding RNA (or ASCO-IncRNA) constitute an AS regulatory module. AtNSR-GFP translational fusions are expressed in primary and lateral root (LR) meristems. Double Atnsr mutants and ASCO overexpressors exhibit an altered ability to form LRs after auxin treatment. Interestingly, auxin induces a major change in AS patterns of many genes, a response largely dependent on NSRs. RNA immunoprecipitation assays demonstrate that AtNSRs interact not only with their alternatively spliced mRNA targets but also with the ASCO-RNA in vivo. The ASCO-RNA displaces an AS target from an NSR-containing complex in vitro. Expression of ASCO-RNA in Arabidopsis affects the splicing patterns of several NSR-regulated mRNA targets. Hence, IncRNA can hijack nuclear AS regulators to modulate AS patterns during development.

Dates and versions

hal-02639339 , version 1 (28-05-2020)

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Florian Bardou, Federico Ariel, Craig G. Simpson, Natali Romero-Barrios, Philippe Laporte, et al.. Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis. Developmental Cell, 2014, 30 (2), pp.166 - 176. ⟨10.1016/j.devcel.2014.06.017⟩. ⟨hal-02639339⟩
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