Translation elicits a growth rate-dependent, genome-wide, differential protein production in <em>Bacillus subtilis</em> - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Accéder directement au contenu
Article Dans Une Revue Molecular Systems Biology Année : 2016

Translation elicits a growth rate-dependent, genome-wide, differential protein production in Bacillus subtilis

Résumé

Complex regulatory programs control cell adaptation to environmental changes by setting condition-specific proteomes. In balanced growth, bacterial protein abundances depend on the dilution rate, transcript abundances and transcript-specific translation efficiencies. We revisited the current theory claiming the invariance of bacterial translation efficiency. By integrating genome-wide transcriptome datasets and datasets from a library of synthetic gfp-reporter fusions, we demonstrated that translation efficiencies in Bacillus subtilis decreased up to fourfold from slow to fast growth. The translation initiation regions elicited a growth rate-dependent, differential production of proteins without regulators, hence revealing a unique, hard-coded, growth rate-dependent mode of regulation. We combined model-based data analyses of transcript and protein abundances genome-wide and revealed that this global regulation is extensively used in B. subtilis We eventually developed a knowledge-based, three-step translation initiation model, experimentally challenged the model predictions and proposed that a growth rate-dependent drop in free ribosome abundance accounted for the differential protein production.

Domaines

Biotechnologies
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Dates et versions

hal-02640581 , version 1 (28-05-2020)

Identifiants

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Olivier Borkowski, Anne Goelzer, Marc Schaffer, Magali Calabre, Ulrike Mäder, et al.. Translation elicits a growth rate-dependent, genome-wide, differential protein production in Bacillus subtilis. Molecular Systems Biology, 2016, 12 (5), pp.870. ⟨10.15252/msb.20156608⟩. ⟨hal-02640581⟩
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